I am trying to import my manifest into QIIME2 using putty. I have created the manifest using Excell with two columns (sample-id and absolute-filepath direction) using the code below;
qiime tools import
But I ended up with the error; Semantic type SampleData[PairedEndSequencesWithQuality]' not a compatible directory format. Please I would be grateful if you could help.
Apologies for the delay here! Happy to help you with this import.
From the screenshot you provided, it looks like there is a small typo in the --type input parameter - I am seeing SampleData[PairedEndSequenceWithQuality], but this type should be specified as SampleData[PairedEndSequencesWithQuality] (sequences vs. sequence).
Go ahead and try re-running the command by copy/pasting what I have listed below: