Generating Separate FASTQ per Sample Using QIIME 1

Hello all and sorry if this is in the wrong area. I’m trying to get individual FASTQ files for each sample from the large output file after a MiSeq run. The plan was to use QIIME 1, run the script on the forward and reverse fastq files separately, then run the to create the separated fastq files. However, I’m running into a few issue. First, I get an error stating some or all bacodes are not golay if I run:
-i reverse.fastq
-o split_libraries_reverse
-b barcodes_fixedheaders.fastq
-m Sponge_mapping_corrected_corrected.txt
–store_demultiplexed_fastq \

I then added “–rev_comp_mapping_barcodes” to the end and that seemed to fix the issue, or at least generate a seqs.fastq file. When I then go to run, I get an error “AttributeError: ‘NoneType’ object has no attribute ‘strip’”

Not sure if there is some modification I need to do to these commands since I’m running a forward and reverse separately instead of joining them, or if there is even a better way to do this. Any help would be greatly appreciated.