Generate table of core-metrics-phylogenetcs randomly subsampled ASVs

Hello @Brandon_Feole1 and welcome to the :qiime2: Forum!

You are looking for the rarefied feature table, which is already one of the outputs of qiime diversity core-metrics-phylogenetic. If you want to directly observe that table, you need to export the BIOM table included in the rarefied table QZA (either following the Exporting Tutorial or directly opening the QZA as a ZIP file and manually extracting it) and then use the biom convert command on the BIOM table. Probably your command will look similar to:

biom convert -i feature-table.biom -o feature-table.tsv --to-tsv

If you have trouble converting the BIOM file, maybe you find this post useful.

Cheers!

Sergio

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