Fragment-insertion sepp running failed

Oddant1 · March 14, 2024, 6:05pm

I talked to my supervisor about this, and his suggestion is give it another 5 or 6 hours and if it's still showing no signs of life ~12 hours in total then kill it. At that point it's been way too long for it to be just hanging, so we can be reasonably certain something did go wrong. He's suggesting that he has seen abnormal behavior from sepp before, and there is a chance it is still running.

I'm sorry this is behaving in such a confusing way! If you get any debug output along the way please post it here.

Sathya-Am · March 14, 2024, 6:14pm

No worries! Thank you so much for all your support! I will keep posting.

Sathya-Am · March 15, 2024, 1:23pm

Hi @Oddant1 It is the same over more than 24h now. Terminal is still open and frozen.

Oddant1 · March 15, 2024, 3:32pm

Are you able to kill the process?

Sathya-Am · March 15, 2024, 4:29pm

Hi @Oddant1 Yes, I just closed the terminal.
And I tried with creating a new temp thinking that might be tmp directory issue. Same thing happened. I have attached my input files here.
rep_seqs_final.qza (212.4 KB)

Oddant1 · March 15, 2024, 5:02pm

I'll see what happens when I try to run it.

Sathya-Am · March 15, 2024, 5:17pm

Thank you so much! I really appreciate it. I've been stuck with this issue for a couple of weeks now. First, I thought it was an OOM issue on my machine, so I upgraded to a new computer. But I see the same issue every time.

Thanks in advance!

Oddant1 · March 15, 2024, 5:39pm

I ran my command half an hour ago with 1 thread, and it looks very similar to what you were seeing. A few processes sitting there with little RAM and 0 CPU usage; however, in my tmp folder I have this directory

And this file is continuing to log
sepp-q2-fragment-insertion-err.log (1.1 MB)

In spite of the apparent 0 CPU usage, it appears as though something is happening slowly but surely.

Oddant1 · March 15, 2024, 5:43pm

It is quite likely that with 32 threads, you are just running out of memory. I can give you no good reason why 1 thread sat there for 24 hours. Maybe try 12 or so threads, and give it the --p-debug flag? It seems as though even though htop is reporting 0 CPU usage something is happening it's just so taking up so little CPU htop isn't registering it.

Sathya-Am · March 15, 2024, 5:57pm

Sounds good! I will try with 12 threads then. I tried earlier with 16 threads too.
I see the same files in my tmp too.

Thanks a lot!

Sathya-Am · March 20, 2024, 4:28pm

Hi @Oddant1, I gave it around 4-5 days and still I don't see anything. But my terminal is open and frozen.
I see some failed actions in my temporary file 'sepp-q2-fragment-insertion-err' report at the end.

Oddant1 · March 20, 2024, 4:31pm

Can you DM me that file?

Sathya-Am · March 20, 2024, 4:42pm

@Oddant1 It gives me this message when I try to attach it.
Sorry, the file you are trying to upload is not authorized (authorized extensions: jpg, jpeg, png, gif, qza, qzv, txt, tsv, ico, csv, zip, fastq, gz, py, biom, nwk, tre, newick, tree, 7z).

Sathya-Am · March 20, 2024, 4:45pm

Traceback (most recent call last):
File "/home/sathya/miniconda3/envs/ raise JobError("\n".join([
sepp.scheduler.JobError: The /home/sathya/miniconda3/envs/qiime2 No error messages available
[11:17:11] jobs.py (line 80): [11:17:11] jobs.py (line 106): [11:17:11] alignment.py (line 553): [11:17:11] alignment.py (line 578): [11:17:11] alignment.py (line 556): [11:17:11] alignment.py (line 727): [11:17:11] alignment.py (line 834): [11:17:11] alignment.py (line 560): [11:17:11] alignment.py (line 615): [11:17:11] exhaustive.py (line 182): [11:17:11] alignment.py (line 727): [11:17:11] alignment.py (line 834): [11:17:11] problem.py (line 246): [11:17:11] alignment.py (line 543): [11:17:11] alignment.py (line 553): Traceback (most recent call last):
File "/home/sathya/miniconda3/envs/ raise JobError("\n".join([
sepp.scheduler.JobError: The /home/sathya/miniconda3/envs/qiime2 No error messages available
[11:17:11] jobs.py (line 80): [11:17:11] jobs.py (line 106): [11:17:11] jobs.py (line 144): return code: -11
output:
error:
[11:17:11] alignment.py (line 578): [11:17:11] alignment.py (line 556): [11:17:11] alignment.py (line 727): [11:17:11] alignment.py (line 834): [11:17:11] alignment.py (line 560): [11:17:11] alignment.py (line 615): [11:17:11] exhaustive.py (line 182): [11:17:11] alignment.py (line 727): [11:17:11] alignment.py (line 834): [11:17:11] problem.py (line 246): [11:17:11] alignment.py (line 543): [11:17:11] alignment.py (line 553): [11:17:11] alignment.py (line 578): [11:17:11] alignment.py (line 556): [11:17:11] alignment.py (line 727): [11:17:11] jobs.py (line 144): return code: -11
output:
error:
[11:17:11] alignment.py (line 834): [11:17:11] alignment.py (line 560): [11:17:11] alignment.py (line 615): [11:17:11] exhaustive.py (line 182): [11:17:11] alignment.py (line 727): [11:17:11] alignment.py (line 834): [11:17:11] problem.py (line 246): [11:17:11] alignment.py (line 543): [11:17:11] alignment.py (line 553): [11:17:11] alignment.py (line 578): [11:17:11] alignment.py (line 556): [11:17:11] alignment.py (line 727): [11:17:11] alignment.py (line 834): [11:17:11] alignment.py (line 560): [11:17:11] alignment.py (line 615): [11:17:11] exhaustive.py (line 182): [11:17:11] alignment.py (line 727): [11:17:11] alignment.py (line 834): [11:17:11] problem.py (line 246): [11:17:11] alignment.py (line 543): [11:17:11] alignment.py (line 553): [11:17:11] alignment.py (line 578): [11:17:11] alignment.py (line 556): [11:17:11] alignment.py (line 727): [11:17:11] alignment.py (line 834): [11:17:11] alignment.py (line 560): [11:17:11] alignment.py (line 615): [11:17:11] exhaustive.py (line 182): [11:17:11] alignment.py (line 727): [11:17:11] alignment.py (line 834): [11:17:11] problem.py (line 246): [11:17:11] alignment.py (line 543): [11:17:11] alignment.py (line 553): [11:17:11] alignment.py (line 578): [11:17:11] alignment.py (line 556): [11:17:11] alignment.py (line 727): [11:17:11] alignment.py (line 834): [11:17:11] alignment.py (line 560): [11:17:11] alignment.py (line 615): [11:17:11] exhaustive.py (line 182): [11:17:11] alignment.py (line 727): [11:17:11] alignment.py (line 834): [11:17:11] problem.py (line 246): [11:17:11] alignment.py (line 543): [11:17:11] alignment.py (line 553): [11:17:11] alignment.py (line 578): [11:17:11] alignment.py (line 556): [11:17:11] alignment.py (line 727): [11:17:11] alignment.py (line 834): [11:17:11] alignment.py (line 560): [11:17:11] alignment.py (line 615): [11:17:11] exhaustive.py (line 182): [11:17:11] alignment.py (line 727): [11:17:11] alignment.py (line 834): [11:17:11] problem.py (line 246): [11:17:11] alignment.py (line 543): [11:17:11] alignment.py (line 553): [11:17:11] alignment.py (line 578): [11:17:11] alignment.py (line 556): [11:17:11] alignment.py (line 727): [11:17:11] alignment.py (line 834): [11:17:11] alignment.py (line 560): [11:17:11] alignment.py (line 615): [11:17:11] exhaustive.py (line 182): [11:17:11] alignment.py (line 727): [11:17:11] alignment.py (line 834): [11:17:11] problem.py (line 246): [11:17:11] alignment.py (line 543): [11:17:11] alignment.py (line 553): [11:17:11] alignment.py (line 578): [11:17:11] alignment.py (line 556): [11:17:11] alignment.py (line 727): [11:17:11] alignment.py (line 834): [11:17:11] alignment.py (line 560): [11:17:11] alignment.py (line 615): [11:17:11] exhaustive.py (line 182): [11:17:11] alignment.py (line 727): [11:17:11] alignment.py (line 834): [11:17:11] problem.py (line 246): [11:17:11] alignment.py (line 543): [11:17:11] alignment.py (line 553): [11:17:11] alignment.py (line 578): [11:17:11] alignment.py (line 556): [11:17:11] alignment.py (line 727): [11:17:11] alignment.py (line 834): [11:17:11] alignment.py (line 560): [11:17:11] alignment.py (line 615): [11:17:11] exhaustive.py (line 182): [11:17:11] alignment.py (line 727): [11:17:11] alignment.py (line 834): [11:17:11] problem.py (line 246): [11:17:11] alignment.py (line 543): [11:17:11] alignment.py (line 553): [11:17:11] alignment.py (line 578): [11:17:11] alignment.py (line 556): [11:17:11] alignment.py (line 727): [11:17:11] alignment.py (line 834): [11:17:11] alignment.py (line 560): [11:17:11] alignment.py (line 615): [11:17:11] exhaustive.py (line 182): [11:17:11] alignment.py (line 727): [11:17:11] alignment.py (line 834): [11:17:11] problem.py (line 246): [11:17:11] alignment.py (line 543): [11:17:11] alignment.py (line 553): [11:17:11] alignment.py (line 578): [11:17:11] alignment.py (line 556): [11:17:11] alignment.py (line 727): [11:17:11] alignment.py (line 834): [11:17:11] alignment.py (line 560): [11:17:11] alignment.py (line 615): [11:17:11] exhaustive.py (line 182): [11:17:11] alignment.py (line 727): [11:17:11] alignment.py (line 834): [11:17:11] problem.py (line 246): [11:17:11] alignment.py (line 543): [11:17:11] alignment.py (line 553): [11:17:11] alignment.py (line 578): [11:17:11] alignment.py (line 556): [11:17:11] alignment.py (line 727): [11:17:11] alignment.py (line 834): [11:17:11] alignment.py (line 560): [11:17:11] alignment.py (line 615): [11:17:11] exhaustive.py (line 182): [11:17:11] alignment.py (line 727): [11:17:11] alignment.py (line 834): [11:17:11] problem.py (line 246): [11:17:11] alignment.py (line 543): [11:17:11] alignment.py (line 553): [11:17:11] alignment.py (line 578): [11:17:11] alignment.py (line 556): [11:17:11] alignment.py (line 727): [11:17:11] alignment.py (line 834): [11:17:11] alignment.py (line 560): [11:17:11] alignment.py (line 615): [11:17:11] exhaustive.py (line 182): [11:17:11] alignment.py (line 727): [11:17:11] alignment.py (line 834): [11:17:11] problem.py (line 246): [11:17:11] alignment.py (line 543): [11:17:11] alignment.py (line 553): [11:17:11] alignment.py (line 578): [11:17:11] alignment.py (line 556): [11:17:11] alignment.py (line 727): [11:17:11] alignment.py (line 834): [11:17:11] alignment.py (line 560): [11:17:11] alignment.py (line 615): [11:17:11] exhaustive.py (line 182): [11:17:11] alignment.py (line 727): [11:17:11] alignment.py (line 834): [11:17:11] problem.py (line 246): [11:17:11] alignment.py (line 543): [11:17:11] alignment.py (line 553): [11:17:11] alignment.py (line 578): [11:17:11] alignment.py (line 556): [11:17:11] alignment.py (line 727): [11:17:11] alignment.py (line 834): [11:17:11] alignment.py (line 560): [11:17:11] alignment.py (line 615): [11:17:11] exhaustive.py (line 182): [11:17:11] alignment.py (line 727): [11:17:11] alignment.py (line 834): [11:17:11] problem.py (line 246): [11:17:11] alignment.py (line 543): [11:17:11] alignment.py (line 553): [11:17:11] alignment.py (line 578): [11:17:11] alignment.py (line 556): [11:17:11] alignment.py (line 727): [11:17:11] alignment.py (line 834): [11:17:11] alignment.py (line 560): [11:17:11] alignment.py (line 615): [11:17:11] exhaustive.py (line 182): [11:17:11] alignment.py (line 727): [11:17:11] alignment.py (line 834): [11:17:11] problem.py (line 246): [11:17:11] alignment.py (line 543): [11:17:11] alignment.py (line 553): [11:17:11] alignment.py (line 578): [11:17:11] alignment.py (line 556): [11:17:11] alignment.py (line 727): [11:17:11] alignment.py (line 834): [11:17:11] alignment.py (line 560): [11:17:11] alignment.py (line 615): [11:17:11] exhaustive.py (line 182): [11:17:11] alignment.py (line 727): [11:17:11] alignment.py (line 834): [11:17:11] problem.py (line 246): [11:17:11] alignment.py (line 543): [11:17:11] alignment.py (line 553): [11:17:11] alignment.py (line 578): [11:17:11] alignment.py (line 556): [11:17:11] alignment.py (line 727): [11:17:11] alignment.py (line 834): [11:17:11] alignment.py (line 560): [11:17:11] alignment.py (line 615): [11:17:11] exhaustive.py (line 182): [11:17:11] alignment.py (line 727): [11:17:11] alignment.py (line 834): [11:17:11] problem.py (line 246): [11:17:11] alignment.py (line 543): [11:17:11] alignment.py (line 553): [11:17:11] alignment.py (line 578): [11:17:11] alignment.py (line 556): [11:17:11] alignment.py (line 727): [11:17:11] alignment.py (line 834): [11:17:11] alignment.py (line 560): [11:17:11] alignment.py (line 615): [11:17:11] exhaustive.py (line 182): [11:17:11] alignment.py (line 727): [11:17:11] alignment.py (line 834): [11:17:11] problem.py (line 246): qiime2-amplicon-2024.2/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run
following execution failed:
-amplicon-2024.2/bin/pplacer --out-dir /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_4 -j 1 -r /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_4/pplacer.backbone.uhhthphh.fasta -s /home/sathya/qiime2-tmp/qiime2/sathya/data/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt -t /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_4/pplacer.tree.r6b8le5c.tre --groups 10 /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_4/pplacer.extended.1.2z06i2ua.fasta
DEBUG: Starting pplacer Job with input: backbone_alignment_file:/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_5/pplacer.backbone.94kmbrlc.fasta, tree_file:/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_5/pplacer.tree.s3zeksyo.tre, info_file:/home/sathya/qiime2-tmp/qiime2/sathya/data/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt, extended alignment:/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_5/pplacer.extended.0.9ovnib8c.fasta, output:/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_5/pplacer.extended.0.9ovnib8c.jplace
DEBUG: Invocation of /home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/bin/pplacer --out-dir /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_5 -j 1 -r /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_5/pplacer.backbone.94kmbrlc.fasta -s /home/sathya/qiime2-tmp/qiime2/sathya/data/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt -t /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_5/pplacer.tree.s3zeksyo.tre --groups 10 /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_5/pplacer.extended.0.9ovnib8c.fasta
DEBUG: Reading sto extended alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/FC_6_1_1/hmmalign.results.4_egj0vy.
DEBUG: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/FC_6_1_1/hmmalign.results.4_egj0vy insertions: 211
INFO: Merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/FC_6_1_1/hmmalign.results.4_egj0vy) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/hmmbuild.input.vv68kwq8.fasta).
DEBUG: Merging started ...
DEBUG: Merging finished ...
DEBUG: Finished merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/FC_6_1_1/hmmalign.results.4_egj0vy) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/hmmbuild.input.vv68kwq8.fasta).
DEBUG: Relabeling 1486 (1486) with 1275 labels.
DEBUG: Merging alignment subset into placement subset for chunk 1: A_6_1.
DEBUG: Merging started ...
DEBUG: Merging finished ...
DEBUG: Reading /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/hmmbuild.input.at30o_16.fasta ['/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/FC_6_2_1/hmmalign.results.16qatdc4'] and relabeling it based on 1275 orig column labels.
DEBUG: Reading base alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/hmmbuild.input.at30o_16.fasta.
DEBUG: Reading sto extended alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/FC_6_2_1/hmmalign.results.16qatdc4.
qiime2-amplicon-2024.2/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run
following execution failed:
-amplicon-2024.2/bin/pplacer --out-dir /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_3 -j 1 -r /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_3/pplacer.backbone.jldjc75l.fasta -s /home/sathya/qiime2-tmp/qiime2/sathya/data/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt -t /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_3/pplacer.tree.vdf_an9m.tre --groups 10 /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_3/pplacer.extended.7.ilw9syy6.fasta
DEBUG: Starting pplacer Job with input: backbone_alignment_file:/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_5/pplacer.backbone.udi3fkgj.fasta, tree_file:/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_5/pplacer.tree.ozc6kk0t.tre, info_file:/home/sathya/qiime2-tmp/qiime2/sathya/data/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt, extended alignment:/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_5/pplacer.extended.1.nbcjlx4r.fasta, output:/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_5/pplacer.extended.1.nbcjlx4r.jplace
DEBUG: Invocation of /home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/bin/pplacer --out-dir /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_5 -j 1 -r /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_5/pplacer.backbone.udi3fkgj.fasta -s /home/sathya/qiime2-tmp/qiime2/sathya/data/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt -t /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_5/pplacer.tree.ozc6kk0t.tre --groups 10 /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_5/pplacer.extended.1.nbcjlx4r.fasta
DEBUG: Finished pplacer Job with input: backbone_alignment_file:/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_5/pplacer.backbone.94kmbrlc.fasta, tree_file:/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_5/pplacer.tree.s3zeksyo.tre, info_file:/home/sathya/qiime2-tmp/qiime2/sathya/data/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt, extended alignment:/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_5/pplacer.extended.0.9ovnib8c.fasta, output:/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_5/pplacer.extended.0.9ovnib8c.jplace with:
DEBUG: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/FC_6_2_1/hmmalign.results.16qatdc4 insertions: 471
INFO: Merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/FC_6_2_1/hmmalign.results.16qatdc4) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/hmmbuild.input.at30o_16.fasta).
DEBUG: Merging started ...
DEBUG: Merging finished ...
DEBUG: Finished merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/FC_6_2_1/hmmalign.results.16qatdc4) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/hmmbuild.input.at30o_16.fasta).
DEBUG: Relabeling 1746 (1746) with 1275 labels.
DEBUG: Merging alignment subset into placement subset for chunk 1: A_6_2.
DEBUG: Merging started ...
DEBUG: Merging finished ...
DEBUG: Reading /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/hmmbuild.input.rq7oqoaw.fasta ['/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/FC_6_3_1/hmmalign.results.xmzq64m1'] and relabeling it based on 1275 orig column labels.
DEBUG: Reading base alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/hmmbuild.input.rq7oqoaw.fasta.
DEBUG: Reading sto extended alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/FC_6_3_1/hmmalign.results.xmzq64m1.
DEBUG: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/FC_6_3_1/hmmalign.results.xmzq64m1 insertions: 222
INFO: Merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/FC_6_3_1/hmmalign.results.xmzq64m1) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/hmmbuild.input.rq7oqoaw.fasta).
DEBUG: Merging started ...
DEBUG: Finished pplacer Job with input: backbone_alignment_file:/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_5/pplacer.backbone.udi3fkgj.fasta, tree_file:/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_5/pplacer.tree.ozc6kk0t.tre, info_file:/home/sathya/qiime2-tmp/qiime2/sathya/data/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt, extended alignment:/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_5/pplacer.extended.1.nbcjlx4r.fasta, output:/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_5/pplacer.extended.1.nbcjlx4r.jplace with:
DEBUG: Merging finished ...
DEBUG: Finished merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/FC_6_3_1/hmmalign.results.xmzq64m1) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/hmmbuild.input.rq7oqoaw.fasta).
DEBUG: Relabeling 1497 (1497) with 1275 labels.
DEBUG: Merging alignment subset into placement subset for chunk 1: A_6_3.
DEBUG: Merging started ...
DEBUG: Merging finished ...
DEBUG: Reading /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/hmmbuild.input.77nk42dv.fasta ['/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/FC_6_0_2/hmmalign.results.vzvegng1'] and relabeling it based on 1275 orig column labels.
DEBUG: Reading base alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/hmmbuild.input.77nk42dv.fasta.
DEBUG: Reading sto extended alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/FC_6_0_2/hmmalign.results.vzvegng1.
DEBUG: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/FC_6_0_2/hmmalign.results.vzvegng1 insertions: 303
INFO: Merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/FC_6_0_2/hmmalign.results.vzvegng1) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/hmmbuild.input.77nk42dv.fasta).
DEBUG: Merging started ...
DEBUG: Merging finished ...
DEBUG: Finished merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/FC_6_0_2/hmmalign.results.vzvegng1) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/hmmbuild.input.77nk42dv.fasta).
DEBUG: Relabeling 1578 (1578) with 1275 labels.
DEBUG: Merging alignment subset into placement subset for chunk 2: A_6_0.
DEBUG: Merging started ...
DEBUG: Merging finished ...
DEBUG: Reading /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/hmmbuild.input.vv68kwq8.fasta ['/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/FC_6_1_2/hmmalign.results.wnpq8lq3'] and relabeling it based on 1275 orig column labels.
DEBUG: Reading base alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/hmmbuild.input.vv68kwq8.fasta.
DEBUG: Reading sto extended alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/FC_6_1_2/hmmalign.results.wnpq8lq3.
DEBUG: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/FC_6_1_2/hmmalign.results.wnpq8lq3 insertions: 211
INFO: Merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/FC_6_1_2/hmmalign.results.wnpq8lq3) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/hmmbuild.input.vv68kwq8.fasta).
DEBUG: Merging started ...
DEBUG: Merging finished ...
DEBUG: Finished merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/FC_6_1_2/hmmalign.results.wnpq8lq3) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/hmmbuild.input.vv68kwq8.fasta).
DEBUG: Relabeling 1486 (1486) with 1275 labels.
DEBUG: Merging alignment subset into placement subset for chunk 2: A_6_1.
DEBUG: Merging started ...
DEBUG: Merging finished ...
DEBUG: Reading /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/hmmbuild.input.at30o_16.fasta ['/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/FC_6_2_2/hmmalign.results.4lhd0hfq'] and relabeling it based on 1275 orig column labels.
DEBUG: Reading base alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/hmmbuild.input.at30o_16.fasta.
DEBUG: Reading sto extended alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/FC_6_2_2/hmmalign.results.4lhd0hfq.
DEBUG: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/FC_6_2_2/hmmalign.results.4lhd0hfq insertions: 509
INFO: Merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/FC_6_2_2/hmmalign.results.4lhd0hfq) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/hmmbuild.input.at30o_16.fasta).
DEBUG: Merging started ...
DEBUG: Merging finished ...
DEBUG: Finished merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/FC_6_2_2/hmmalign.results.4lhd0hfq) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/hmmbuild.input.at30o_16.fasta).
DEBUG: Relabeling 1784 (1784) with 1275 labels.
DEBUG: Merging alignment subset into placement subset for chunk 2: A_6_2.
DEBUG: Merging started ...
DEBUG: Merging finished ...
DEBUG: Reading /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/hmmbuild.input.rq7oqoaw.fasta ['/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/FC_6_3_2/hmmalign.results.pzrgsj3u'] and relabeling it based on 1275 orig column labels.
DEBUG: Reading base alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/hmmbuild.input.rq7oqoaw.fasta.
DEBUG: Reading sto extended alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/FC_6_3_2/hmmalign.results.pzrgsj3u.
DEBUG: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/FC_6_3_2/hmmalign.results.pzrgsj3u insertions: 207
INFO: Merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/FC_6_3_2/hmmalign.results.pzrgsj3u) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/hmmbuild.input.rq7oqoaw.fasta).
DEBUG: Merging started ...
DEBUG: Merging finished ...
DEBUG: Finished merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/FC_6_3_2/hmmalign.results.pzrgsj3u) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/hmmbuild.input.rq7oqoaw.fasta).
DEBUG: Relabeling 1482 (1482) with 1275 labels.
DEBUG: Merging alignment subset into placement subset for chunk 2: A_6_3.
DEBUG: Merging started ...
DEBUG: Merging finished ...
DEBUG: Reading /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/hmmbuild.input.77nk42dv.fasta ['/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/FC_6_0_3/hmmalign.results.k5qiktra'] and relabeling it based on 1275 orig column labels.
DEBUG: Reading base alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/hmmbuild.input.77nk42dv.fasta.
DEBUG: Reading sto extended alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/FC_6_0_3/hmmalign.results.k5qiktra.
DEBUG: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/FC_6_0_3/hmmalign.results.k5qiktra insertions: 363
INFO: Merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/FC_6_0_3/hmmalign.results.k5qiktra) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/hmmbuild.input.77nk42dv.fasta).
DEBUG: Merging started ...
DEBUG: Merging finished ...
DEBUG: Finished merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/FC_6_0_3/hmmalign.results.k5qiktra) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/hmmbuild.input.77nk42dv.fasta).
DEBUG: Relabeling 1638 (1638) with 1275 labels.
DEBUG: Merging alignment subset into placement subset for chunk 3: A_6_0.
DEBUG: Merging started ...
DEBUG: Merging finished ...
DEBUG: Reading /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/hmmbuild.input.vv68kwq8.fasta ['/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/FC_6_1_3/hmmalign.results.zdabm9a3'] and relabeling it based on 1275 orig column labels.
DEBUG: Reading base alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/hmmbuild.input.vv68kwq8.fasta.
DEBUG: Reading sto extended alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/FC_6_1_3/hmmalign.results.zdabm9a3.
DEBUG: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/FC_6_1_3/hmmalign.results.zdabm9a3 insertions: 211
INFO: Merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/FC_6_1_3/hmmalign.results.zdabm9a3) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/hmmbuild.input.vv68kwq8.fasta).
DEBUG: Merging started ...
DEBUG: Merging finished ...
DEBUG: Finished merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/FC_6_1_3/hmmalign.results.zdabm9a3) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/hmmbuild.input.vv68kwq8.fasta).
DEBUG: Relabeling 1486 (1486) with 1275 labels.
DEBUG: Merging alignment subset into placement subset for chunk 3: A_6_1.
DEBUG: Merging started ...
DEBUG: Merging finished ...
DEBUG: Reading /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/hmmbuild.input.at30o_16.fasta ['/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/FC_6_2_3/hmmalign.results.nkofjfze'] and relabeling it based on 1275 orig column labels.
DEBUG: Reading base alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/hmmbuild.input.at30o_16.fasta.
DEBUG: Reading sto extended alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/FC_6_2_3/hmmalign.results.nkofjfze.
DEBUG: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/FC_6_2_3/hmmalign.results.nkofjfze insertions: 495
INFO: Merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/FC_6_2_3/hmmalign.results.nkofjfze) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/hmmbuild.input.at30o_16.fasta).
DEBUG: Merging started ...
DEBUG: Merging finished ...
DEBUG: Finished merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/FC_6_2_3/hmmalign.results.nkofjfze) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/hmmbuild.input.at30o_16.fasta).
DEBUG: Relabeling 1770 (1770) with 1275 labels.
DEBUG: Merging alignment subset into placement subset for chunk 3: A_6_2.
DEBUG: Merging started ...
DEBUG: Merging finished ...
DEBUG: Reading /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/hmmbuild.input.rq7oqoaw.fasta ['/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/FC_6_3_3/hmmalign.results.7_y1tt82'] and relabeling it based on 1275 orig column labels.
DEBUG: Reading base alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/hmmbuild.input.rq7oqoaw.fasta.
DEBUG: Reading sto extended alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/FC_6_3_3/hmmalign.results.7_y1tt82.
DEBUG: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/FC_6_3_3/hmmalign.results.7_y1tt82 insertions: 216
INFO: Merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/FC_6_3_3/hmmalign.results.7_y1tt82) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/hmmbuild.input.rq7oqoaw.fasta).
DEBUG: Merging started ...
DEBUG: Merging finished ...
DEBUG: Finished merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/FC_6_3_3/hmmalign.results.7_y1tt82) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/hmmbuild.input.rq7oqoaw.fasta).
DEBUG: Relabeling 1491 (1491) with 1275 labels.
DEBUG: Merging alignment subset into placement subset for chunk 3: A_6_3.
DEBUG: Merging started ...
DEBUG: Merging finished ...
DEBUG: Reading /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/hmmbuild.input.77nk42dv.fasta ['/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/FC_6_0_4/hmmalign.results.mi85xl2q'] and relabeling it based on 1275 orig column labels.
DEBUG: Reading base alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/hmmbuild.input.77nk42dv.fasta.
DEBUG: Reading sto extended alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/FC_6_0_4/hmmalign.results.mi85xl2q.
DEBUG: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/FC_6_0_4/hmmalign.results.mi85xl2q insertions: 394
INFO: Merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/FC_6_0_4/hmmalign.results.mi85xl2q) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/hmmbuild.input.77nk42dv.fasta).
DEBUG: Merging started ...
DEBUG: Merging finished ...
DEBUG: Finished merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/FC_6_0_4/hmmalign.results.mi85xl2q) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/hmmbuild.input.77nk42dv.fasta).
DEBUG: Relabeling 1669 (1669) with 1275 labels.
DEBUG: Merging alignment subset into placement subset for chunk 4: A_6_0.
DEBUG: Merging started ...
DEBUG: Merging finished ...
DEBUG: Reading /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/hmmbuild.input.vv68kwq8.fasta ['/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/FC_6_1_4/hmmalign.results.mpyg6c7a'] and relabeling it based on 1275 orig column labels.
DEBUG: Reading base alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/hmmbuild.input.vv68kwq8.fasta.
DEBUG: Reading sto extended alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/FC_6_1_4/hmmalign.results.mpyg6c7a.
DEBUG: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/FC_6_1_4/hmmalign.results.mpyg6c7a insertions: 229
INFO: Merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/FC_6_1_4/hmmalign.results.mpyg6c7a) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/hmmbuild.input.vv68kwq8.fasta).
DEBUG: Merging started ...
DEBUG: Merging finished ...
DEBUG: Finished merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/FC_6_1_4/hmmalign.results.mpyg6c7a) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/hmmbuild.input.vv68kwq8.fasta).
DEBUG: Relabeling 1504 (1504) with 1275 labels.
DEBUG: Merging alignment subset into placement subset for chunk 4: A_6_1.
DEBUG: Merging started ...
DEBUG: Merging finished ...
DEBUG: Reading /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/hmmbuild.input.at30o_16.fasta ['/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/FC_6_2_4/hmmalign.results.jsyzf2g4'] and relabeling it based on 1275 orig column labels.
DEBUG: Reading base alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/hmmbuild.input.at30o_16.fasta.
DEBUG: Reading sto extended alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/FC_6_2_4/hmmalign.results.jsyzf2g4.
DEBUG: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/FC_6_2_4/hmmalign.results.jsyzf2g4 insertions: 451
INFO: Merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/FC_6_2_4/hmmalign.results.jsyzf2g4) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/hmmbuild.input.at30o_16.fasta).
DEBUG: Merging started ...
DEBUG: Merging finished ...
DEBUG: Finished merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/FC_6_2_4/hmmalign.results.jsyzf2g4) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/hmmbuild.input.at30o_16.fasta).
DEBUG: Relabeling 1726 (1726) with 1275 labels.
DEBUG: Merging alignment subset into placement subset for chunk 4: A_6_2.
DEBUG: Merging started ...
DEBUG: Merging finished ...
DEBUG: Reading /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/hmmbuild.input.rq7oqoaw.fasta ['/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/FC_6_3_4/hmmalign.results.123dmvv0'] and relabeling it based on 1275 orig column labels.
DEBUG: Reading base alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/hmmbuild.input.rq7oqoaw.fasta.
DEBUG: Reading sto extended alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/FC_6_3_4/hmmalign.results.123dmvv0.
DEBUG: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/FC_6_3_4/hmmalign.results.123dmvv0 insertions: 218
INFO: Merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/FC_6_3_4/hmmalign.results.123dmvv0) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/hmmbuild.input.rq7oqoaw.fasta).
DEBUG: Merging started ...
DEBUG: Merging finished ...
DEBUG: Finished merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/FC_6_3_4/hmmalign.results.123dmvv0) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/hmmbuild.input.rq7oqoaw.fasta).
DEBUG: Relabeling 1493 (1493) with 1275 labels.
DEBUG: Merging alignment subset into placement subset for chunk 4: A_6_3.
DEBUG: Merging started ...
DEBUG: Merging finished ...
DEBUG: Reading /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/hmmbuild.input.77nk42dv.fasta ['/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/FC_6_0_5/hmmalign.results.hy76r89f'] and relabeling it based on 1275 orig column labels.
DEBUG: Reading base alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/hmmbuild.input.77nk42dv.fasta.
DEBUG: Reading sto extended alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/FC_6_0_5/hmmalign.results.hy76r89f.
DEBUG: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/FC_6_0_5/hmmalign.results.hy76r89f insertions: 343
INFO: Merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/FC_6_0_5/hmmalign.results.hy76r89f) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/hmmbuild.input.77nk42dv.fasta).
DEBUG: Merging started ...
DEBUG: Merging finished ...
DEBUG: Finished merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/FC_6_0_5/hmmalign.results.hy76r89f) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/hmmbuild.input.77nk42dv.fasta).
DEBUG: Relabeling 1618 (1618) with 1275 labels.
DEBUG: Merging alignment subset into placement subset for chunk 5: A_6_0.
DEBUG: Merging started ...
DEBUG: Merging finished ...
DEBUG: Reading /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/hmmbuild.input.vv68kwq8.fasta ['/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/FC_6_1_5/hmmalign.results.8ik2buyq'] and relabeling it based on 1275 orig column labels.
DEBUG: Reading base alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/hmmbuild.input.vv68kwq8.fasta.
DEBUG: Reading sto extended alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/FC_6_1_5/hmmalign.results.8ik2buyq.
DEBUG: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/FC_6_1_5/hmmalign.results.8ik2buyq insertions: 223
INFO: Merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/FC_6_1_5/hmmalign.results.8ik2buyq) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/hmmbuild.input.vv68kwq8.fasta).
DEBUG: Merging started ...
DEBUG: Merging finished ...
DEBUG: Finished merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/FC_6_1_5/hmmalign.results.8ik2buyq) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/hmmbuild.input.vv68kwq8.fasta).
DEBUG: Relabeling 1498 (1498) with 1275 labels.
DEBUG: Merging alignment subset into placement subset for chunk 5: A_6_1.
DEBUG: Merging started ...
DEBUG: Merging finished ...
DEBUG: Reading /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/hmmbuild.input.at30o_16.fasta ['/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/FC_6_2_5/hmmalign.results.kj32825a'] and relabeling it based on 1275 orig column labels.
DEBUG: Reading base alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/hmmbuild.input.at30o_16.fasta.
DEBUG: Reading sto extended alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/FC_6_2_5/hmmalign.results.kj32825a.
DEBUG: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/FC_6_2_5/hmmalign.results.kj32825a insertions: 504
INFO: Merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/FC_6_2_5/hmmalign.results.kj32825a) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/hmmbuild.input.at30o_16.fasta).
DEBUG: Merging started ...
DEBUG: Merging finished ...
DEBUG: Finished merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/FC_6_2_5/hmmalign.results.kj32825a) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/hmmbuild.input.at30o_16.fasta).
DEBUG: Relabeling 1779 (1779) with 1275 labels.
DEBUG: Merging alignment subset into placement subset for chunk 5: A_6_2.
DEBUG: Merging started ...
DEBUG: Merging finished ...
DEBUG: Reading /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/hmmbuild.input.rq7oqoaw.fasta ['/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/FC_6_3_5/hmmalign.results.oym4qac_'] and relabeling it based on 1275 orig column labels.
DEBUG: Reading base alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/hmmbuild.input.rq7oqoaw.fasta.
DEBUG: Reading sto extended alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/FC_6_3_5/hmmalign.results.oym4qac_.
DEBUG: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/FC_6_3_5/hmmalign.results.oym4qac_ insertions: 276
INFO: Merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/FC_6_3_5/hmmalign.results.oym4qac_) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/hmmbuild.input.rq7oqoaw.fasta).
DEBUG: Merging started ...
DEBUG: Merging finished ...
DEBUG: Finished merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/FC_6_3_5/hmmalign.results.oym4qac_) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/hmmbuild.input.rq7oqoaw.fasta).
DEBUG: Relabeling 1551 (1551) with 1275 labels.
DEBUG: Merging alignment subset into placement subset for chunk 5: A_6_3.
DEBUG: Merging started ...
DEBUG: Merging finished ...
DEBUG: Reading /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/hmmbuild.input.77nk42dv.fasta ['/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/FC_6_0_6/hmmalign.results.f1mrvn4d'] and relabeling it based on 1275 orig column labels.
DEBUG: Reading base alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/hmmbuild.input.77nk42dv.fasta.
DEBUG: Reading sto extended alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/FC_6_0_6/hmmalign.results.f1mrvn4d.
DEBUG: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/FC_6_0_6/hmmalign.results.f1mrvn4d insertions: 270
INFO: Merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/FC_6_0_6/hmmalign.results.f1mrvn4d) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/hmmbuild.input.77nk42dv.fasta).
DEBUG: Merging started ...
DEBUG: Merging finished ...
DEBUG: Finished merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/FC_6_0_6/hmmalign.results.f1mrvn4d) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/hmmbuild.input.77nk42dv.fasta).
DEBUG: Relabeling 1545 (1545) with 1275 labels.
DEBUG: Merging alignment subset into placement subset for chunk 6: A_6_0.
DEBUG: Merging started ...
DEBUG: Merging finished ...
DEBUG: Reading /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/hmmbuild.input.vv68kwq8.fasta ['/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/FC_6_1_6/hmmalign.results.ystucnpv'] and relabeling it based on 1275 orig column labels.

Sathya-Am · March 20, 2024, 4:46pm

@Oddant1
[11:17:11] alignment.py (line 543): DEBUG: Reading base alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/hmmbuild.input.vv68kwq8.fasta.
[11:17:11] alignment.py (line 553): DEBUG: Reading sto extended alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/FC_6_1_6/hmmalign.results.ystucnpv.
[11:17:11] alignment.py (line 578): DEBUG: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/FC_6_1_6/hmmalign.results.ystucnpv insertions: 210
[11:17:11] alignment.py (line 556): INFO: Merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/FC_6_1_6/hmmalign.results.ystucnpv) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/hmmbuild.input.vv68kwq8.fasta).
[11:17:11] alignment.py (line 727): DEBUG: Merging started ...
[11:17:11] alignment.py (line 834): DEBUG: Merging finished ...
[11:17:11] alignment.py (line 560): DEBUG: Finished merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/FC_6_1_6/hmmalign.results.ystucnpv) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/hmmbuild.input.vv68kwq8.fasta).
[11:17:11] alignment.py (line 615): DEBUG: Relabeling 1485 (1485) with 1275 labels.
[11:17:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_6_1.
[11:17:11] alignment.py (line 727): DEBUG: Merging started ...
[11:17:11] alignment.py (line 834): DEBUG: Merging finished ...
[11:17:11] problem.py (line 246): DEBUG: Reading /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/hmmbuild.input.at30o_16.fasta ['/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/FC_6_2_6/hmmalign.results.g3tf0u4d'] and relabeling it based on 1275 orig column labels.
[11:17:11] alignment.py (line 543): DEBUG: Reading base alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/hmmbuild.input.at30o_16.fasta.
[11:17:11] alignment.py (line 553): DEBUG: Reading sto extended alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/FC_6_2_6/hmmalign.results.g3tf0u4d.
[11:17:11] alignment.py (line 578): DEBUG: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/FC_6_2_6/hmmalign.results.g3tf0u4d insertions: 470
[11:17:11] alignment.py (line 556): INFO: Merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/FC_6_2_6/hmmalign.results.g3tf0u4d) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/hmmbuild.input.at30o_16.fasta).
[11:17:11] alignment.py (line 727): DEBUG: Merging started ...
[11:17:11] alignment.py (line 834): DEBUG: Merging finished ...
[11:17:11] alignment.py (line 560): DEBUG: Finished merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/FC_6_2_6/hmmalign.results.g3tf0u4d) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/hmmbuild.input.at30o_16.fasta).
[11:17:11] alignment.py (line 615): DEBUG: Relabeling 1745 (1745) with 1275 labels.
[11:17:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_6_2.
[11:17:11] alignment.py (line 727): DEBUG: Merging started ...
[11:17:11] alignment.py (line 834): DEBUG: Merging finished ...
[11:17:11] problem.py (line 246): DEBUG: Reading /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/hmmbuild.input.rq7oqoaw.fasta ['/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/FC_6_3_6/hmmalign.results.nin0pb8t'] and relabeling it based on 1275 orig column labels.
[11:17:11] alignment.py (line 543): DEBUG: Reading base alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/hmmbuild.input.rq7oqoaw.fasta.
[11:17:11] alignment.py (line 553): DEBUG: Reading sto extended alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/FC_6_3_6/hmmalign.results.nin0pb8t.
[11:17:11] alignment.py (line 578): DEBUG: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/FC_6_3_6/hmmalign.results.nin0pb8t insertions: 206
[11:17:11] alignment.py (line 556): INFO: Merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/FC_6_3_6/hmmalign.results.nin0pb8t) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/hmmbuild.input.rq7oqoaw.fasta).
[11:17:11] alignment.py (line 727): DEBUG: Merging started ...
[11:17:11] alignment.py (line 834): DEBUG: Merging finished ...
[11:17:11] alignment.py (line 560): DEBUG: Finished merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/FC_6_3_6/hmmalign.results.nin0pb8t) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/hmmbuild.input.rq7oqoaw.fasta).
[11:17:11] alignment.py (line 615): DEBUG: Relabeling 1481 (1481) with 1275 labels.
[11:17:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 6: A_6_3.
[11:17:11] alignment.py (line 727): DEBUG: Merging started ...
[11:17:11] alignment.py (line 834): DEBUG: Merging finished ...
[11:17:11] problem.py (line 246): DEBUG: Reading /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/hmmbuild.input.77nk42dv.fasta ['/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/FC_6_0_7/hmmalign.results.qpx9xk6b'] and relabeling it based on 1275 orig column labels.
[11:17:11] alignment.py (line 543): DEBUG: Reading base alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/hmmbuild.input.77nk42dv.fasta.
[11:17:11] alignment.py (line 553): DEBUG: Reading sto extended alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/FC_6_0_7/hmmalign.results.qpx9xk6b.
[11:17:11] alignment.py (line 578): DEBUG: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/FC_6_0_7/hmmalign.results.qpx9xk6b insertions: 318
[11:17:11] alignment.py (line 556): INFO: Merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/FC_6_0_7/hmmalign.results.qpx9xk6b) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/hmmbuild.input.77nk42dv.fasta).
[11:17:11] alignment.py (line 727): DEBUG: Merging started ...
[11:17:11] alignment.py (line 834): DEBUG: Merging finished ...
[11:17:11] alignment.py (line 560): DEBUG: Finished merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/FC_6_0_7/hmmalign.results.qpx9xk6b) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_0/hmmbuild.input.77nk42dv.fasta).
[11:17:11] alignment.py (line 615): DEBUG: Relabeling 1593 (1593) with 1275 labels.
[11:17:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_6_0.
[11:17:11] alignment.py (line 727): DEBUG: Merging started ...
[11:17:11] alignment.py (line 834): DEBUG: Merging finished ...
[11:17:11] problem.py (line 246): DEBUG: Reading /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/hmmbuild.input.vv68kwq8.fasta and relabeling it based on 1275 orig column labels.
[11:17:11] alignment.py (line 543): DEBUG: Reading base alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_1/hmmbuild.input.vv68kwq8.fasta.
[11:17:11] alignment.py (line 615): DEBUG: Relabeling 1275 (1275) with 1275 labels.
[11:17:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_6_1.
[11:17:11] alignment.py (line 727): DEBUG: Merging started ...
[11:17:11] alignment.py (line 834): DEBUG: Merging finished ...
[11:17:11] problem.py (line 246): DEBUG: Reading /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/hmmbuild.input.at30o_16.fasta ['/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/FC_6_2_7/hmmalign.results.o1agwlow'] and relabeling it based on 1275 orig column labels.
[11:17:11] alignment.py (line 543): DEBUG: Reading base alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/hmmbuild.input.at30o_16.fasta.
[11:17:11] alignment.py (line 553): DEBUG: Reading sto extended alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/FC_6_2_7/hmmalign.results.o1agwlow.
[11:17:11] alignment.py (line 578): DEBUG: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/FC_6_2_7/hmmalign.results.o1agwlow insertions: 464
[11:17:11] alignment.py (line 556): INFO: Merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/FC_6_2_7/hmmalign.results.o1agwlow) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/hmmbuild.input.at30o_16.fasta).
[11:17:11] alignment.py (line 727): DEBUG: Merging started ...
[11:17:11] alignment.py (line 834): DEBUG: Merging finished ...
[11:17:11] alignment.py (line 560): DEBUG: Finished merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/FC_6_2_7/hmmalign.results.o1agwlow) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_2/hmmbuild.input.at30o_16.fasta).
[11:17:11] alignment.py (line 615): DEBUG: Relabeling 1739 (1739) with 1275 labels.
[11:17:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_6_2.
[11:17:11] alignment.py (line 727): DEBUG: Merging started ...
[11:17:11] alignment.py (line 834): DEBUG: Merging finished ...
[11:17:11] problem.py (line 246): DEBUG: Reading /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/hmmbuild.input.rq7oqoaw.fasta ['/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/FC_6_3_7/hmmalign.results.p3m_zq3z'] and relabeling it based on 1275 orig column labels.
[11:17:11] alignment.py (line 543): DEBUG: Reading base alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/hmmbuild.input.rq7oqoaw.fasta.
[11:17:11] alignment.py (line 553): DEBUG: Reading sto extended alignment: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/FC_6_3_7/hmmalign.results.p3m_zq3z.
[11:17:11] alignment.py (line 578): DEBUG: /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/FC_6_3_7/hmmalign.results.p3m_zq3z insertions: 212
[11:17:11] alignment.py (line 556): INFO: Merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/FC_6_3_7/hmmalign.results.p3m_zq3z) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/hmmbuild.input.rq7oqoaw.fasta).
[11:17:11] alignment.py (line 727): DEBUG: Merging started ...
[11:17:11] alignment.py (line 834): DEBUG: Merging finished ...
[11:17:11] alignment.py (line 560): DEBUG: Finished merging extension sto file (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/FC_6_3_7/hmmalign.results.p3m_zq3z) into base alignment (/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/A_6_3/hmmbuild.input.rq7oqoaw.fasta).
[11:17:11] alignment.py (line 615): DEBUG: Relabeling 1487 (1487) with 1275 labels.
[11:17:11] exhaustive.py (line 182): DEBUG: Merging alignment subset into placement subset for chunk 7: A_6_3.
[11:17:11] alignment.py (line 727): DEBUG: Merging started ...
[11:17:11] alignment.py (line 834): DEBUG: Merging finished ...
[11:17:11] alignment.py (line 203): DEBUG: Writing alignment of type <class 'sepp.alignment.ReadonlySubalignment'> with length 25 to file /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/pplacer.extended.0.jbjqkoq7.fasta
[11:17:11] alignment.py (line 203): DEBUG: Writing alignment of type <class 'sepp.alignment.ReadonlySubalignment'> with length 3147 to file /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/pplacer.backbone.slxf1aic.fasta
[11:17:11] alignment.py (line 203): DEBUG: Writing alignment of type <class 'sepp.alignment.ReadonlySubalignment'> with length 25 to file /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/pplacer.extended.1.sq6bq2up.fasta
[11:17:11] alignment.py (line 203): DEBUG: Writing alignment of type <class 'sepp.alignment.ReadonlySubalignment'> with length 3147 to file /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/pplacer.backbone.u8p3hed_.fasta
[11:17:11] alignment.py (line 203): DEBUG: Writing alignment of type <class 'sepp.alignment.ReadonlySubalignment'> with length 24 to file /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/pplacer.extended.2.5xuc8_3p.fasta
[11:17:11] alignment.py (line 203): DEBUG: Writing alignment of type <class 'sepp.alignment.ReadonlySubalignment'> with length 3147 to file /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/pplacer.backbone.2xbyzmaa.fasta
[11:17:11] alignment.py (line 203): DEBUG: Writing alignment of type <class 'sepp.alignment.ReadonlySubalignment'> with length 24 to file /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/pplacer.extended.3.yigrqu2i.fasta
[11:17:11] alignment.py (line 203): DEBUG: Writing alignment of type <class 'sepp.alignment.ReadonlySubalignment'> with length 3147 to file /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/pplacer.backbone.dvvrwa6f.fasta
[11:17:11] alignment.py (line 203): DEBUG: Writing alignment of type <class 'sepp.alignment.ReadonlySubalignment'> with length 24 to file /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/pplacer.extended.4.gl7209cz.fasta
[11:17:11] alignment.py (line 203): DEBUG: Writing alignment of type <class 'sepp.alignment.ReadonlySubalignment'> with length 3147 to file /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/pplacer.backbone.koii9ty3.fasta
[11:17:11] alignment.py (line 203): DEBUG: Writing alignment of type <class 'sepp.alignment.ReadonlySubalignment'> with length 23 to file /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/pplacer.extended.5.rtsh1mak.fasta
[11:17:11] alignment.py (line 203): DEBUG: Writing alignment of type <class 'sepp.alignment.ReadonlySubalignment'> with length 3147 to file /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/pplacer.backbone.ngzrhpp6.fasta
[11:17:11] alignment.py (line 203): DEBUG: Writing alignment of type <class 'sepp.alignment.ReadonlySubalignment'> with length 22 to file /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/pplacer.extended.6.s2lvd1pf.fasta
[11:17:11] alignment.py (line 203): DEBUG: Writing alignment of type <class 'sepp.alignment.ReadonlySubalignment'> with length 3147 to file /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/pplacer.backbone.wfsl5ro9.fasta
[11:17:11] alignment.py (line 203): DEBUG: Writing alignment of type <class 'sepp.alignment.ReadonlySubalignment'> with length 21 to file /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/pplacer.extended.7.g3fvrvvt.fasta
[11:17:11] alignment.py (line 203): DEBUG: Writing alignment of type <class 'sepp.alignment.ReadonlySubalignment'> with length 3147 to file /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_6/pplacer.backbone.4uokxb80.fasta
multiprocessing.pool.RemoteTraceback:
"""
Traceback (most recent call last):
File "/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/lib/python3.8/multiprocessing/pool.py", line 125, in worker
result = (True, func(*args, **kwds))
File "/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/lib/python3.8/site-packages/sepp/scheduler.py", line 74, in call
return self.run()
File "/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run
raise JobError("\n".join([
sepp.scheduler.JobError: The following execution failed:
/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/bin/pplacer --out-dir /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_2 -j 1 -r /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_2/pplacer.backbone.7k8g08zl.fasta -s /home/sathya/qiime2-tmp/qiime2/sathya/data/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt -t /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_2/pplacer.tree.2_kliy4v.tre --groups 10 /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_2/pplacer.extended.0.a6rdcc4y.fasta
No error messages available
"""

The above exception was the direct cause of the following exception:

Traceback (most recent call last):
File "/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/bin/run_sepp.py", line 26, in
ExhaustiveAlgorithm().run()
File "/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/lib/python3.8/site-packages/sepp/algorithm.py", line 174, in run
if (not JobPool().wait_for_all_jobs()):
File "/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/lib/python3.8/site-packages/sepp/scheduler.py", line 382, in wait_for_all_jobs
result.get()
File "/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/lib/python3.8/multiprocessing/pool.py", line 771, in get
raise self.value
sepp.scheduler.JobError: The following execution failed:
/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/bin/pplacer --out-dir /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_2 -j 1 -r /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_2/pplacer.backbone.7k8g08zl.fasta -s /home/sathya/qiime2-tmp/qiime2/sathya/data/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt -t /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_2/pplacer.tree.2_kliy4v.tre --groups 10 /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_2/pplacer.extended.0.a6rdcc4y.fasta
No error messages available
Traceback (most recent call last):
File "/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run
raise JobError("\n".join([
sepp.scheduler.JobError: The following execution failed:
/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/bin/pplacer --out-dir /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_2 -j 1 -r /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_2/pplacer.backbone.yjiie6mb.fasta -s /home/sathya/qiime2-tmp/qiime2/sathya/data/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt -t /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_2/pplacer.tree.9sstz852.tre --groups 10 /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_2/pplacer.extended.3.aylcv20m.fasta
No error messages available
Traceback (most recent call last):
File "/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run
raise JobError("\n".join([
sepp.scheduler.JobError: The following execution failed:
/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/bin/pplacer --out-dir /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_4 -j 1 -r /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_4/pplacer.backbone.z_nvw5k3.fasta -s /home/sathya/qiime2-tmp/qiime2/sathya/data/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt -t /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_4/pplacer.tree.58970fpg.tre --groups 10 /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_4/pplacer.extended.7.2jb2p4y2.fasta
No error messages available
Traceback (most recent call last):
File "/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run
raise JobError("\n".join([
sepp.scheduler.JobError: The following execution failed:
/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/bin/pplacer --out-dir /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_2 -j 1 -r /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_2/pplacer.backbone.8ylts5m2.fasta -s /home/sathya/qiime2-tmp/qiime2/sathya/data/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt -t /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_2/pplacer.tree.com1zk1m.tre --groups 10 /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_2/pplacer.extended.1.hzmauion.fasta
No error messages available
[11:17:11] jobs.py (line 80): DEBUG: Starting pplacer Job with input: backbone_alignment_file:/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_5/pplacer.backbone.dh53ouux.fasta, tree_file:/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_5/pplacer.tree.udfdyyu7.tre, info_file:/home/sathya/qiime2-tmp/qiime2/sathya/data/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt, extended alignment:/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_5/pplacer.extended.2.gclj4sgq.fasta, output:/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_5/pplacer.extended.2.gclj4sgq.jplace
[11:17:11] jobs.py (line 106): DEBUG: Invocation of /home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/bin/pplacer --out-dir /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_5 -j 1 -r /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_5/pplacer.backbone.dh53ouux.fasta -s /home/sathya/qiime2-tmp/qiime2/sathya/data/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt -t /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_5/pplacer.tree.udfdyyu7.tre --groups 10 /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_5/pplacer.extended.2.gclj4sgq.fasta
Traceback (most recent call last):
File "/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run
raise JobError("\n".join([
sepp.scheduler.JobError: The following execution failed:
/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/bin/pplacer --out-dir /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_2 -j 1 -r /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_2/pplacer.backbone.p6tw880e.fasta -s /home/sathya/qiime2-tmp/qiime2/sathya/data/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt -t /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_2/pplacer.tree.mczoz1sv.tre --groups 10 /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_2/pplacer.extended.4.341iqdi2.fasta
No error messages available
Traceback (most recent call last):
File "/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run
raise JobError("\n".join([
sepp.scheduler.JobError: The following execution failed:
/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/bin/pplacer --out-dir /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_2 -j 1 -r /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_2/pplacer.backbone.yfvj01z3.fasta -s /home/sathya/qiime2-tmp/qiime2/sathya/data/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt -t /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_2/pplacer.tree.etd8os3u.tre --groups 10 /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_2/pplacer.extended.2.jl03defn.fasta
No error messages available
Traceback (most recent call last):
File "/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run
raise JobError("\n".join([
sepp.scheduler.JobError: The following execution failed:
/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/bin/pplacer --out-dir /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_2 -j 1 -r /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_2/pplacer.backbone.ivll1jkf.fasta -s /home/sathya/qiime2-tmp/qiime2/sathya/data/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt -t /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_2/pplacer.tree.jm1xack5.tre --groups 10 /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_2/pplacer.extended.5.9z0a0sk0.fasta
No error messages available
Traceback (most recent call last):
File "/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run
raise JobError("\n".join([
sepp.scheduler.JobError: The following execution failed:
/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/bin/pplacer --out-dir /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_2 -j 1 -r /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_2/pplacer.backbone.d1amc3c.fasta -s /home/sathya/qiime2-tmp/qiime2/sathya/data/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt -t /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_2/pplacer.tree.cgu4wgk0.tre --groups 10 /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_2/pplacer.extended.6.ckjh286e.fasta
No error messages available
Traceback (most recent call last):
File "/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run
raise JobError("\n".join([
sepp.scheduler.JobError: The following execution failed:
/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/bin/pplacer --out-dir /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_1 -j 1 -r /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_1/pplacer.backbone.6hc08ixs.fasta -s /home/sathya/qiime2-tmp/qiime2/sathya/data/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt -t /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_1/pplacer.tree.w830aukb.tre --groups 10 /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_1/pplacer.extended.0.nxgb5fk6.fasta
No error messages available
Traceback (most recent call last):
File "/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run
raise JobError("\n".join([
sepp.scheduler.JobError: The following execution failed:
/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/bin/pplacer --out-dir /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_4 -j 1 -r /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_4/pplacer.backbone.zg5n1uov.fasta -s /home/sathya/qiime2-tmp/qiime2/sathya/data/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt -t /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_4/pplacer.tree.lq4zj9ol.tre --groups 10 /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_4/pplacer.extended.4.bbcymwc5.fasta
No error messages available
Traceback (most recent call last):
File "/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run
raise JobError("\n".join([
sepp.scheduler.JobError: The following execution failed:
/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/bin/pplacer --out-dir /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_4 -j 1 -r /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_4/pplacer.backbone.l9wjefoy.fasta -s /home/sathya/qiime2-tmp/qiime2/sathya/data/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt -t /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_4/pplacer.tree.jzzq_5xs.tre --groups 10 /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_4/pplacer.extended.2.30xsnajn.fasta
No error messages available
Traceback (most recent call last):
File "/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run
raise JobError("\n".join([
sepp.scheduler.JobError: The following execution failed:
/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/bin/pplacer --out-dir /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_1 -j 1 -r /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_1/pplacer.backbone.t_2fjofi.fasta -s /home/sathya/qiime2-tmp/qiime2/sathya/data/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt -t /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_1/pplacer.tree.h4e85ell.tre --groups 10 /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_1/pplacer.extended.1.0y5mb12n.fasta
No error messages available
[11:17:11] jobs.py (line 144): DEBUG: Finished pplacer Job with input: backbone_alignment_file:/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_5/pplacer.backbone.dh53ouux.fasta, tree_file:/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_5/pplacer.tree.udfdyyu7.tre, info_file:/home/sathya/qiime2-tmp/qiime2/sathya/data/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt, extended alignment:/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_5/pplacer.extended.2.gclj4sgq.fasta, output:/home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_5/pplacer.extended.2.gclj4sgq.jplace with:
return code: -11
output:
error:
Traceback (most recent call last):
File "/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run
raise JobError("\n".join([
sepp.scheduler.JobError: The following execution failed:
/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/bin/pplacer --out-dir /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_4 -j 1 -r /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_4/pplacer.backbone.a091dwfw.fasta -s /home/sathya/qiime2-tmp/qiime2/sathya/data/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt -t /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_4/pplacer.tree.y1u9x1x.tre --groups 10 /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_4/pplacer.extended.3.zjt7zcty.fasta
No error messages available
Traceback (most recent call last):
File "/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run
raise JobError("\n".join([
sepp.scheduler.JobError: The following execution failed:
/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/bin/pplacer --out-dir /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_5 -j 1 -r /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_5/pplacer.backbone.dh53ouux.fasta -s /home/sathya/qiime2-tmp/qiime2/sathya/data/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt -t /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_5/pplacer.tree.udfdyyu7.tre --groups 10 /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_5/pplacer.extended.2.gclj4sgq.fasta
No error messages available
Traceback (most recent call last):
File "/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run
raise JobError("\n".join([
sepp.scheduler.JobError: The following execution failed:
/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/bin/pplacer --out-dir /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_2 -j 1 -r /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_2/pplacer.backbone.oezhzkxb.fasta -s /home/sathya/qiime2-tmp/qiime2/sathya/data/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt -t /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_2/pplacer.tree.6s63a6ap.tre --groups 10 /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_2/pplacer.extended.7.rjghcf6j.fasta
No error messages available
Traceback (most recent call last):
File "/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run
raise JobError("\n".join([
sepp.scheduler.JobError: The following execution failed:
/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/bin/pplacer --out-dir /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_1 -j 1 -r /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_1/pplacer.backbone.fz4wem22.fasta -s /home/sathya/qiime2-tmp/qiime2/sathya/data/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt -t /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_1/pplacer.tree.9i4xubah.tre --groups 10 /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_1/pplacer.extended.2.8r012yyw.fasta
No error messages available
Traceback (most recent call last):
File "/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run
raise JobError("\n".join([
sepp.scheduler.JobError: The following execution failed:
/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/bin/pplacer --out-dir /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_1 -j 1 -r /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_1/pplacer.backbone.imvfjj5e.fasta -s /home/sathya/qiime2-tmp/qiime2/sathya/data/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt -t /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_1/pplacer.tree.zf0l87x9.tre --groups 10 /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_1/pplacer.extended.3.r_di291v.fasta
No error messages available
Traceback (most recent call last):
File "/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run
raise JobError("\n".join([
sepp.scheduler.JobError: The following execution failed:
/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/bin/pplacer --out-dir /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_1 -j 1 -r /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_1/pplacer.backbone.463d0u31.fasta -s /home/sathya/qiime2-tmp/qiime2/sathya/data/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt -t /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_1/pplacer.tree.7e4q5zja.tre --groups 10 /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_1/pplacer.extended.4.wt7pemb1.fasta
No error messages available
Traceback (most recent call last):
File "/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run
raise JobError("\n".join([
sepp.scheduler.JobError: The following execution failed:
/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/bin/pplacer --out-dir /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_4 -j 1 -r /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_4/pplacer.backbone.lcllub24.fasta -s /home/sathya/qiime2-tmp/qiime2/sathya/data/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt -t /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_4/pplacer.tree.7s67g8x.tre --groups 10 /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_4/pplacer.extended.5.kdce15qz.fasta
No error messages available
Traceback (most recent call last):
File "/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run
raise JobError("\n".join([
sepp.scheduler.JobError: The following execution failed:
/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/bin/pplacer --out-dir /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_4 -j 1 -r /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_4/pplacer.backbone.tft0b0wf.fasta -s /home/sathya/qiime2-tmp/qiime2/sathya/data/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt -t /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_4/pplacer.tree.sw1azbm8.tre --groups 10 /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_4/pplacer.extended.6.8p6rpwbf.fasta
No error messages available
Traceback (most recent call last):
File "/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run
raise JobError("\n".join([
sepp.scheduler.JobError: The following execution failed:
/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/bin/pplacer --out-dir /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_1 -j 1 -r /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_1/pplacer.backbone.5sxolhm2.fasta -s /home/sathya/qiime2-tmp/qiime2/sathya/data/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt -t /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_1/pplacer.tree.n7owdmpf.tre --groups 10 /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_1/pplacer.extended.5.67f1xv2f.fasta
No error messages available
Traceback (most recent call last):
File "/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run
raise JobError("\n".join([
sepp.scheduler.JobError: The following execution failed:
/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/bin/pplacer --out-dir /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_0 -j 1 -r /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_0/pplacer.backbone.32u0bcjq.fasta -s /home/sathya/qiime2-tmp/qiime2/sathya/data/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt -t /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_0/pplacer.tree.swgzrvy6.tre --groups 10 /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_0/pplacer.extended.0.x5578odd.fasta
No error messages available
Traceback (most recent call last):
File "/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run
raise JobError("\n".join([
sepp.scheduler.JobError: The following execution failed:
/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/bin/pplacer --out-dir /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_0 -j 1 -r /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_0/pplacer.backbone.seimt8xa.fasta -s /home/sathya/qiime2-tmp/qiime2/sathya/data/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt -t /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_0/pplacer.tree.jlffj0gb.tre --groups 10 /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_0/pplacer.extended.1.fvfg05ql.fasta
No error messages available
Traceback (most recent call last):
File "/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run
raise JobError("\n".join([
sepp.scheduler.JobError: The following execution failed:
/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/bin/pplacer --out-dir /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_0 -j 1 -r /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_0/pplacer.backbone.a0slhivo.fasta -s /home/sathya/qiime2-tmp/qiime2/sathya/data/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt -t /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_0/pplacer.tree.agd7o1nl.tre --groups 10 /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_0/pplacer.extended.4.d9tnw8qf.fasta
No error messages available
Traceback (most recent call last):
File "/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run
raise JobError("\n".join([
sepp.scheduler.JobError: The following execution failed:
/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/bin/pplacer --out-dir /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_0 -j 1 -r /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_0/pplacer.backbone.yb3ycyq2.fasta -s /home/sathya/qiime2-tmp/qiime2/sathya/data/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt -t /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_0/pplacer.tree.ouf99rbb.tre --groups 10 /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_0/pplacer.extended.3.c4vyih4p.fasta
No error messages available
Traceback (most recent call last):
File "/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run
raise JobError("\n".join([
sepp.scheduler.JobError: The following execution failed:
/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/bin/pplacer --out-dir /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_0 -j 1 -r /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_0/pplacer.backbone.fea7fz9n.fasta -s /home/sathya/qiime2-tmp/qiime2/sathya/data/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt -t /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_0/pplacer.tree.1u052faj.tre --groups 10 /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_0/pplacer.extended.2.wv7pbqxx.fasta
No error messages available
Traceback (most recent call last):
File "/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run
raise JobError("\n".join([
sepp.scheduler.JobError: The following execution failed:
/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/bin/pplacer --out-dir /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_0 -j 1 -r /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_0/pplacer.backbone.rnzc0s53.fasta -s /home/sathya/qiime2-tmp/qiime2/sathya/data/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt -t /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_0/pplacer.tree.nk4sy158.tre --groups 10 /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_0/pplacer.extended.5.qc8p_7jw.fasta
No error messages available
Traceback (most recent call last):
File "/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run
raise JobError("\n".join([
sepp.scheduler.JobError: The following execution failed:
/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/bin/pplacer --out-dir /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_0 -j 1 -r /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_0/pplacer.backbone.wfow088f.fasta -s /home/sathya/qiime2-tmp/qiime2/sathya/data/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt -t /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_0/pplacer.tree.be54ksp4.tre --groups 10 /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_0/pplacer.extended.7._2my4dhw.fasta
No error messages available
Traceback (most recent call last):
File "/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run
raise JobError("\n".join([
sepp.scheduler.JobError: The following execution failed:
/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/bin/pplacer --out-dir /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_0 -j 1 -r /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_0/pplacer.backbone.gu68lcqh.fasta -s /home/sathya/qiime2-tmp/qiime2/sathya/data/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt -t /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_0/pplacer.tree.9p0rrfyn.tre --groups 10 /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_0/pplacer.extended.6.ycs_x6bm.fasta
No error messages available
Traceback (most recent call last):
File "/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/lib/python3.8/site-packages/sepp/jobs.py", line 150, in run
raise JobError("\n".join([
sepp.scheduler.JobError: The following execution failed:
/home/sathya/miniconda3/envs/qiime2-amplicon-2024.2/bin/pplacer --out-dir /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_5 -j 1 -r /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_5/pplacer.backbone.94kmbrlc.fasta -s /home/sathya/qiime2-tmp/qiime2/sathya/data/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt -t /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_5/pplacer.tree.s3zeksyo.tre --groups 10 /home/sathya/qiime2-tmp/tmp.lCzTTfFTuH/sepp-tempssd-hnYQKMbzTS/q2-fragment-insertion.kxpvrlwc/root/P_5/pplacer.extended.0.9ovnib8c.fasta
No error messages available

Sathya-Am · March 20, 2024, 4:48pm

@Oddant1 above two are the beginning where it started to fail and end of report.

Oddant1 · March 20, 2024, 5:21pm

@Sathya-Am it appears as though this may be WSL related. That sepp.scheduler.JobError with No error messages available appears to have happened to many different people on WSL in the past. Here, here, and here for instance.

I wasn't seeing any of that during the test run I did on my laptop which is a native Linux Mint (an Ubuntu derivative) install. Unfortunately, getting this to run successfully on WSL may be impossible. Do you have access to a native Linux machine or a Mac?

Sathya-Am · March 20, 2024, 5:36pm

@Oddant1 Oh! I see. No, I don't have access to a Linux machine or a Mac. Maybe I will discuss with my supervisor to get access to Linux or a Mac.

Thank you so much for all your help with this.

Oddant1 · March 20, 2024, 5:37pm

No problem, I'm sorry we couldn't get it to work.

Oddant1 · March 20, 2024, 5:38pm

Also note that if you really can't get a native linux install a proper virtual machine might do the job.