Final_otu_map.txt from QIIME2

Is it possible to get an output file such as QIIME1 “final_otu_map_mc_2.txt” using QIIME2?

Hi @ayazagan! No, it is not currently possible to obtain a QIIME 1-style “OTU Map”. We have an open issue to track progress on this feature (e.g. q2-dada2 and q2-vsearch would benefit from having an OTU Map), but I don’t have an ETA for when it’ll make it into a release. We’ll follow up here when it happens!

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