filtering taxa present less than 15%

I would like to filter out taxa presented in less than 15% . Is this the command?

qiime feature-table filter-features
–i-table table.qza
–p-min-samples 7
–o-filtered-table sample-contingency-filtered-table.qza
I have 47 subjects so, 15% of that is 7 .

In less than 15% of samples? Yes you have the correct command :smile:

this will filter out features present in fewer than 7 samples, not 7 different subjects — the two are the same if you have 1 sample per subject.

1 Like

yes i have one sample per subject, in total they are 47 subjects and 47 samples

This topic was automatically closed 31 days after the last reply. New replies are no longer allowed.