I have a total of 192 samples that were run on a MiSeq sequencer. I would like to filter the samples and only retain 137 samples before running DADA2.
Is this possible? The other samples are from a collaborator and I don’t want to include them in my analysis. I know that they can be filtered out later on when I have a table but won’t this affect my results? I would like to exclude them before running through the QIIME2 pipeline.
Thank you for your help!