filtering by taxa: SILVA

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Hi @Kotryna,

I have a couple of suggestions about the SILVA reference database.

  1. Update to the latest pre-made SILVA classifiers. If needed, you can train the classifiers yourself using these files.
  2. Use RESCRIPt to make your own SILVA reference database.

As for filtering away organelle / plastid sequences, see the documentation here.

Also, this information may help too.

-Cheers!
-Mike

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