I have just killed it, but I let it run 3-4 days. I was having similar issues with summarize_taxa.py from Qiime1 (i was curious how it would handle it). I will try to run it on one of our larger servers, though I don’t see why the current workstation (64GB RAM) or the Qiime1 server (128 GB RAM) would be having problems.
I have just killed it, but I let it run 3-4 days. I was having similar issues with summarize_taxa.py from Qiime1 (i was curious how it would handle it). I will try to run it on one of our larger servers, though I don’t see why the current workstation (64GB RAM) or the Qiime1 server (128 GB RAM) would be having problems.
Thanks @ejunkins! This ran for me in about 5 minutes on my laptop... One critical difference though is you didn't provide metadata to me for testing, so I ran the following: