Hi! I'm not sure I think there is a bug with the "feature-table filter-x" command on metadata categories with "-".
For example, here is my command:
qiime feature-table filter-samples
--i-table 16S_ec_filtered_table.qza
--m-metadata-file PMF_metadata.txt
--p-where "location-id='cleland'"
--o-filtered-table no-cleland-filtered-table.qza
On previous runs, not using this same dataset I did something similar where it was something like
--p-where "sample-or-control='control'" \
and it worked just fine in filtering out the control samples. I had to go into the metadata file and change the location-id to something like LocationID for it to work. Will this be fixed, if it needs fixing?
