kindly assist
I am trying to train the newer version of Silva which was released in August 2020
With the following command
qiime tools import
–type ‘FeatureData[Taxonomy]’
–input-format HeaderlessTSVTaxonomyFormat
–input-path taxmap_slv_lsu_parc_138.1.txt
–output-path taxmap-taxonomy.qza
And I get the error
pps/chpc/bio/anaconda3/envs/qiime2-2019.10/lib/python3.6/site-packages/q2_types/feature_data/_transformer.py:83: FutureWarning: ‘get_duplicates’ is deprecated and
will be removed in a future release. You can use idx[idx.duplicated()].unique() instead
“are duplicated: %s” % ', '.join(df.index.get_duplicates()))
Traceback (most recent call last):
File “/apps/chpc/bio/anaconda3/envs/qiime2-2019.10/lib/python3.6/site-packages/q2cli/builtin/tools.py”, line 158, in import_data
view_type=input_format)
File “/apps/chpc/bio/anaconda3/envs/qiime2-2019.10/lib/python3.6/site-packages/qiime2/sdk/result.py”, line 241, in import_data
validate_level=‘max’)
File “/apps/chpc/bio/anaconda3/envs/qiime2-2019.10/lib/python3.6/site-packages/qiime2/sdk/result.py”, line 267, in _from_view
result = transformation(view, validate_level)
File “/apps/chpc/bio/anaconda3/envs/qiime2-2019.10/lib/python3.6/site-packages/qiime2/core/transform.py”, line 70, in transformation
new_view = transformer(view)
File “/apps/chpc/bio/anaconda3/envs/qiime2-2019.10/lib/python3.6/site-packages/qiime2/core/transform.py”, line 220, in wrapped
file_view = transformer(view)
File “/apps/chpc/bio/anaconda3/envs/qiime2-2019.10/lib/python3.6/site-packages/q2_types/feature_data/_transformer.py”, line 178, in _20
_taxonomy_formats_to_dataframe(str(ff), has_header=False))
File “/apps/chpc/bio/anaconda3/envs/qiime2-2019.10/lib/python3.6/site-packages/q2_types/feature_data/_transformer.py”, line 83, in _taxonomy_formats_to_dataframe
“are duplicated: %s” % ', '.join(df.index.get_duplicates()))
Kindly assist