I am trying to import a custom taxonomy file. The sequences got in fine, but I am having trouble here. I am using qiime 2021.11 running with conda.
Here is the command I ran:
qiime tools import
My file looks like this (txt tab separated):
For some reason nothing happens, and no activities from conda appear on htop, even after an hour, while I get my sequences imported within seconds. I tried to find answers on other topics but it looks like no one had this problem? Any ideas?
Thank you and qiime has been amazing to use!
Welcome to the forums!
I wonder if this is the issue:
This symbol here ^
That symbol looks like a “Smart” quote and not a 'normal' quote. Try using the normal quote instead and see if the command is able to run.
Wow, that was easy. It was indeed a fail on my part.
It worked, thank you so much @colinbrislawn !
I also had to change grom --source-format to --input-format
That's really crazy because I basically copy pasted the command for the sequence file (changing just the arguments that were needed) and it worked fine...
In any case thank you so much!!!
Happy to help!
Word processors like Google Docs and MS Word can add these smart quotes
Try using a 'text editor' instead