Assuming this is the correct way I then get a text file showing only the rownames, but when I copy and paste them as column names to complete the matrix it appears that the last three columns are all 0's as such:
But they have nonzero values across the rows, shown below, which means the 0s shouldn't be there.
Sigh...is there a way to forget 4 hours of pointless googling...
Thank you for the catch, I'll report back if I somehow don't get what is expected.
And yes my googling also led me to that forum which is quite interesting as a lot of my previous work was based on the phyloseq unifrac outputs instead of the qiime2 ones. Wonder if it will get fixed
We have all been there! Will it help if i confess i spent half of yesterday trying to figure out why an analysis wasn't working before i figure out I hadn't aligned my data the way I though i had?
And i'm not sure about the phyloseq timing? You could ping the github, but I have no clue what's happening there.