Errors when importing biomtable and tree files created by Ucluster into QIIME2

User Support
9

Both of my feature table and the tree has 923 features. There are no mismatched features when I looked into both of the feature table and the tree.
For the similar feature IDs, they represent different sequences. For example, Jul27.50v_1972 is one of the sequences from the sample July27th, 50m depth. Jul27.50v_1414 is another sequence from the sample July27th, 50m depth.

The last piece of my command looks like this:

qiime feature-table summarize \
  --i-table /path/to/feature_table.qza \
  --o-visualization /path/to/feature_table.qzv \
  --m-sample-metadata-file /path/to/metadata 
qiime diversity core-metrics-phylogenetic \
  --i-phylogeny  /path/to/rooted_tree.qza \
  --i-table /path/to/feature_table.qza \
  --p-sampling-depth 380 \
  --m-metadata-file /path/to/metadata \
  --output-dir /path/to/core-metrics-results

Sorry for the unclear paste.
Do you mean that QIIME2 is confused by the feature IDs?