I have used a collapse table get a gneiss dendrogram-heamap. However when I try to get the balance names using 'gneiss balance-taxonomy' command, I get the following error: Plugin error from gneiss: "None of [Index(['D_0__Bacteria;D_1__Proteobacteria;D_2__Alphaproteobacteria;D_3__Rhizobiales;D_4__…

Hey @Jewelna_Osei-Poku , Would you be able to provide your full command? My hunch is that either something like a table is empty, or the IDs are now taxonomy and we don't have a matching set of IDs anymore.

Hello ebolyen, Thanks for the reply. Kindly find below the sequence of commands: qiime taxa collapse --i-table Analyses/table.qza --i-taxonomy Analyses/taxonomy_from_Hughes.qza --p-level 6 --o-collapsed-table Analyses/table_level_6.qza qiime gneiss correlation-clustering --i-table Analyses/table_…

Hi @Jewelna_Osei-Poku ! Please see this response to a similar post: gneiss balance-taxonomy & taxonomy issues - #3 by thermokarst Thanks!

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