I am having the same issue, running the cmd on a 16 cores 64gb RAM computer, and with plenty of space in each partition.
Here my cmd and error:
classifier …/…/reference_datasets/16S/silva-132-99-nb-classifier.qza --i-reads deblur/16S_repr_seq_deblur_run#2.qza --o-classification 16S_taxonomy2_run#2.qza
Traceback (most recent call last):
File “/media/nec3_HDD/miniconda3/envs/qiime2-2018.8/bin/qiime”, line 11, in
sys.exit(qiime())
File “/media/nec3_HDD/miniconda3/envs/qiime2-2018.8/lib/python3.5/site-packages/click/core.py”, line 722, in call
return self.main(*args, **kwargs)
File “/media/nec3_HDD/miniconda3/envs/qiime2-2018.8/lib/python3.5/site-packages/click/core.py”, line 697, in main
rv = self.invoke(ctx)
File “/media/nec3_HDD/miniconda3/envs/qiime2-2018.8/lib/python3.5/site-packages/click/core.py”, line 1066, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File “/media/nec3_HDD/miniconda3/envs/qiime2-2018.8/lib/python3.5/site-packages/click/core.py”, line 1066, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File “/media/nec3_HDD/miniconda3/envs/qiime2-2018.8/lib/python3.5/site-packages/click/core.py”, line 895, in invoke
return ctx.invoke(self.callback, **ctx.params)
File “/media/nec3_HDD/miniconda3/envs/qiime2-2018.8/lib/python3.5/site-packages/click/core.py”, line 535, in invoke
return callback(*args, **kwargs)
File “/media/nec3_HDD/miniconda3/envs/qiime2-2018.8/lib/python3.5/site-packages/q2cli/commands.py”, line 244, in call
arguments, missing_in, verbose, quiet = self.handle_in_params(kwargs)
File “/media/nec3_HDD/miniconda3/envs/qiime2-2018.8/lib/python3.5/site-packages/q2cli/commands.py”, line 326, in handle_in_params
kwargs, fallback=cmd_fallback)
File “/media/nec3_HDD/miniconda3/envs/qiime2-2018.8/lib/python3.5/site-packages/q2cli/handlers.py”, line 375, in get_value
artifact = qiime2.sdk.Result.load(path)
File “/media/nec3_HDD/miniconda3/envs/qiime2-2018.8/lib/python3.5/site-packages/qiime2/sdk/result.py”, line 65, in load
archiver = archive.Archiver.load(filepath)
File “/media/nec3_HDD/miniconda3/envs/qiime2-2018.8/lib/python3.5/site-packages/qiime2/core/archive/archiver.py”, line 299, in load
rec = archive.mount(path)
File “/media/nec3_HDD/miniconda3/envs/qiime2-2018.8/lib/python3.5/site-packages/qiime2/core/archive/archiver.py”, line 199, in mount
root = self.extract(filepath)
File “/media/nec3_HDD/miniconda3/envs/qiime2-2018.8/lib/python3.5/site-packages/qiime2/core/archive/archiver.py”, line 210, in extract
zf.extract(name, path=str(filepath))
File “/media/nec3_HDD/miniconda3/envs/qiime2-2018.8/lib/python3.5/zipfile.py”, line 1335, in extract
return self._extract_member(member, path, pwd)
File “/media/nec3_HDD/miniconda3/envs/qiime2-2018.8/lib/python3.5/zipfile.py”, line 1399, in _extract_member
shutil.copyfileobj(source, target)
File “/media/nec3_HDD/miniconda3/envs/qiime2-2018.8/lib/python3.5/shutil.py”, line 82, in copyfileobj
fdst.write(buf)
OSError: [Errno 28] No space left on device
Here the output of df -i:
Filesystem Inodes IUsed IFree IUse% Mounted on
udev 8245005 393 8244612 1% /dev
tmpfs 8246999 1086 8245913 1% /run
/dev/vda1 655360 78476 576884 12% /
tmpfs 8246999 1 8246998 1% /dev/shm
tmpfs 8246999 3 8246996 1% /run/lock
tmpfs 8246999 16 8246983 1% /sys/fs/cgroup
/dev/vdb 31457280 11 31457269 1% /mnt
tmpfs 8246999 4 8246995 1% /run/user/1000
/dev/vdc 32768000 566482 32201518 2% /media/nec3_HDD