KE_XU
(KE XU)
1
Hi, I encountered an issue with importing data.
The error message I got is:
There was a problem importing seq:
seq is not a(n) CasavaOneEightSingleLanePerSampleDirFmt:
Duplicate samples in forward reads: {'2', '1'}
But I checked my data and there is no duplicated files and each filed are paired.
I have 619 paired samples.
The codes I used is:
How could I fixed this problem or do I need to use another type for --type?
Hi @KE_XU,
It appears that the file names to not obey the Casava format.
The text before the first _
is expected to be the unique sample name. Hence the error:
It thinks that 2
and 1
are the sample names. Which it interprets as duplicated as several of your files begin with these values.
-Mike
1 Like
KE_XU
(KE XU)
3
Thanks for your help! It works after I modified the unique name for 1 and 2.
1 Like
system
(system)
Closed
4
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