I am trying to mask my aligned sequences, but when I run the ‘qiime alignment mask’ command (per Moving Pictures tutorial), I get an error saying that the command is not found.
Specifically: ‘-bash: qiime: command not found’
I’ve tried slightly modified versions of this command too: ‘alignment mask’, ‘qiime tools alignment mask’, ‘mask alignment’ etc all with similar results.
Am I using an outdated code or something?
#EDIT# I’ve realized my mistake and fixed it