Hello everyone, I am new pleasure to meet you!
I ran the following dada2 command on denoising paired-end data.
#!/bin/bash
#SBATCH --job-name=dada
#SBATCH --output=/g100/home/userexternal/MYUSER/miniconda3/envs/script_annamaria/dada_job.out
#SBATCH --error=/g100/home/userexternal/MYUSER/miniconda3/envs/script_annamaria/dada_job.err
#SBATCH --mail-type=ALL
#SBATCH --mail-user=myemail
#SBATCH --time=1:00:00
#SBATCH --nodes=1
#SBATCH --ntasks-per-node=32
#SBATCH --mem=10GB
#SBATCH --partition=g100_usr_prod
#SBATCH --account=myaccount
qiime dada2 denoise-paired --i-demultiplexed-seqs /g100_scratch/userexternal/XXX/esp11r1002l.qza --p-trunc-len-f 299 --p-trunc-len-r 219 --o-table /g100_scratch/userexternal/MYUSER/170124/dada/esp11r1002l_table.qza --o-representative-sequences /g100_scratch/userexternal/MYUSER/170124/dada/esp11r1002l_rep-seqs.qza --o-denoising-stats /g100_scratch/userexternal/MYUSER/170124/dada/esp11r1002l_stats.qza
and I get the following error:
Plugin error from dada2
An error was encountered while running DADA2 in R (return code -9) please inspect stdout and stderr to learn more.
Could someone help me please?
thank you!!