Hello qiime2 developers
I am trying to import an otu table created in qiime1 ( it might be from version 1.8 or older) with 18s data ( taxonomy was assigned with silva).
importing th feature table did not give me any error:
qiime tools import
--input-path otu_table_json.biom
--type 'FeatureTable[Frequency]'
--input-format BIOMV100Format
--output-path feature-table.qza
But i have a problem when i do it for the taxonomy:
qiime tools import \
--input-path otu_table_json.biom
--output-path taxonomy.qza
--input-format BIOMV100Format
--type "FeatureData[Taxonomy]"
Traceback (most recent call last):
File "/home/iratxezarra/.miniconda3/envs/qiime2-2019.10/lib/python3.6/site-packages/q2cli/builtin/tools.py", line 158, in import_data
view_type=input_format)
File "/home/iratxezarra/.miniconda3/envs/qiime2-2019.10/lib/python3.6/site-packages/qiime2/sdk/result.py", line 241, in import_data
validate_level='max')
File "/home/iratxezarra/.miniconda3/envs/qiime2-2019.10/lib/python3.6/site-packages/qiime2/sdk/result.py", line 266, in _from_view
recorder=recorder)
File "/home/iratxezarra/.miniconda3/envs/qiime2-2019.10/lib/python3.6/site-packages/qiime2/core/transform.py", line 59, in make_transformation
(self._view_type, other._view_type))
Exception: No transformation from <class 'q2_types.feature_table._format.BIOMV100Format'> to <class 'qiime2.plugin.model.directory_format.TSVTaxonomyDirectoryFormat'>
An unexpected error has occurred:
No transformation from <class 'q2_types.feature_table._format.BIOMV100Format'> to <class 'qiime2.plugin.model.dotu_table_json.biom (244.9 KB) irectory_format.TSVTaxonomyDirectoryFormat'>
Could you help me figure out what the problem might be? (here i imported the otu table i am using, hopefully you could see right away is something is off in my biom!!
Thank you so so much for the help and the hard work you do
Cheers