Hi, Patrick. The p-values you get from the output file are the raw p-values, i.e. the original p-values from the statistical tests without FDR correction. Note that our method does not provide FDR corrected p-value, because our way of controlling the FDR doesn't required adjusted p-values, but based on estimated FDR and desired control level (cutoff alpha), it is guaranteed to control the FDR at the desired level. So all the OTUs you see in the output file were the OTUs found to be statistically significant after DS-FDR correction, but their p-values and test statistic were the uncorrected ones from the original tests.