I’m currently working on our pipeline ampliseq that includes QIIME2 for certain steps in a nextflow automated script. For this, I attempted to use directly the Docker Image for v2020.11 from quay.io, however, I recieved the error message
Command 'ps' required by nextflow to collect task metrics cannot be found. Nextflow requires
ps to be installed for metrics/trace/report generation in addition to a few other tools.
So I wanted to ask if you see the possibility to include
ps in your docker container so that it can be used with nextflow (had only a problem with missing
ps, but all others seem available, i.e.