# DADA2 Truncating Reverse Read

**URL:** https://forum.qiime2.org/t/dada2-truncating-reverse-read/4667
**Category:** User Support
**Tags:** dada2, demux, summarize
**Created:** [June 21, 2018, 5:48pm UTC](https://forum.qiime2.org/t/dada2-truncating-reverse-read/4667 "2018-06-21T17:48:19Z")
**Posts on this page:** 5
**Page:** 1

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### Author: ![ninaxhua](https://forum.qiime2.org/letter_avatar_proxy/v4/letter/n/ac91a4/32.png) [@ninaxhua](https://forum.qiime2.org/u/ninaxhua)
#### Post date: [June 21, 2018, 5:48pm UTC](https://forum.qiime2.org/t/dada2-truncating-reverse-read/4667/1 "2018-06-21T17:48:19Z")

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Hello,

I was wondering if it was concerning to see this message occur multiple times during error learning and denoising steps: "Not all sequences were the same length." This occurred when I used '0' as --p-trunc-len-r value since I didn't want to truncate the reverse read.

However, when I re-ran DADA2 with --p-trunc-len-r value set to the last sequence base position of the reverse read in the Demux visualization, I didn't encounter the message. Essentially, I did not truncate the reverse read right?

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### Author: ![thermokarst](https://forum.qiime2.org/letter_avatar_proxy/v4/letter/t/8e7dd6/32.png) [@thermokarst](https://forum.qiime2.org/u/thermokarst)
#### Post date: [June 22, 2018, 12:35am UTC](https://forum.qiime2.org/t/dada2-truncating-reverse-read/4667/2 "2018-06-22T00:35:22Z")

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### Author: ![thermokarst](https://forum.qiime2.org/letter_avatar_proxy/v4/letter/t/8e7dd6/32.png) [@thermokarst](https://forum.qiime2.org/u/thermokarst)
#### Post date: [June 22, 2018, 12:38am UTC](https://forum.qiime2.org/t/dada2-truncating-reverse-read/4667/3 "2018-06-22T00:38:29Z")

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Hey there @ninaxhua!

> [@ninaxhua](#):
>
> I used ‘0’ as --p-trunc-len-r value since I didn’t want to truncate the reverse read.

👍

> [@ninaxhua](#):
>
> Essentially, I did not truncate the reverse read right?

No, I don't think that is right - I think you did truncate your sequences. The [`demux summarize`](https://docs.qiime2.org/2018.4/plugins/available/demux/summarize/) method only uses a subsample of reads by default (10000 reads), which means that you could actually have longer reads that just aren't represented in the viz. You could rerun and specify the `--p-n` parameter to whatever the total number of reads are to get a more complete picture.

Hope that helps! 🦖 :qiime2:

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### Author: ![thermokarst](https://forum.qiime2.org/letter_avatar_proxy/v4/letter/t/8e7dd6/32.png) [@thermokarst](https://forum.qiime2.org/u/thermokarst)
#### Post date: [June 22, 2018, 12:38am UTC](https://forum.qiime2.org/t/dada2-truncating-reverse-read/4667/4 "2018-06-22T00:38:31Z")

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### Author: ![system](https://forum-qiime2-org.s3.dualstack.us-west-2.amazonaws.com/original/3X/2/1/21af5fe23cb6f4579467c66a9ed94e55274ca7bd.svg) [@system](https://forum.qiime2.org/u/system)
#### Post date: [July 23, 2018, 6:38am UTC](https://forum.qiime2.org/t/dada2-truncating-reverse-read/4667/5 "2018-07-23T06:38:34Z")

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