I’m wondering if anybody can tell me how to create a rooted tree for the relationship between samples. I have a rooted tree for the relationship between ASVs but I need to create a tree that can show how my samples are related to one another. Any help would be greatly appreciated.
Please visit this page. You can find more options with their visualizations, such as alpha, beta, correlation, core-metric, etc.
I hope it helps you.
And thank you @TurboQiimer for pointing @Sophie_Louise in the right direction
More specificially, @Sophie_Louise, this action sounds like the one that you are looking for:
Alternatively (and perhaps a little more straightforward and intuitive) would be to create a heatmap with UPGMA clustering directly on the plot:
Unfortunately, neither of these will output a tree that you can use in other analyses…
Thank you @TurboQiimer and @Nicholas_Bokulich very much for pointing me in the right direction. I really appreciate the help.