Create a FeatureID table with count frequency data for each sample

[SoilRotifer (Mike Robeson)]

Hi @hdoris,

You can try the approach of this post:

How to build an OTU table

Hi @neocat, This is intended. If you work through the tutorials again, you'll notice that the feature-table (i.e. the counts table) is kept as a separate file from the taxonomy. I suggest reading through the overview, for more details. If you'd like to take a quick look at an old-style QIIME 1 like table, you can run the following commands: qiime feature-table transpose \ --i-table table.qza \ --o-transposed-feature-table table-transposed.qza qiime metadata tabulate \ -…

Then simply add --m-imput-files 5_denoise_dada2_seq_file.qza to that command.

This should give you a tab delimited feature table with the feature ID, taxonomy, and sequence. Then you can tabulate (make a QZV) and then click on the export button. Which will provide a text file that you can open in a spread sheet.

Is this what you are looking for?

-Mike