Hello, this is the first time of using QIIME to analysis DATA. Now after assign taxonomy, I tried to make a table to review by following codes.
qiime taxa collapse --i-table table.qza --i-taxonomy taxonomy.qza --p-level 7 --o-collapsed-table feature-table-class.qza
While converting to tsv,by the following codes
biom convert -i feature-table-class.qza -o table.tsv --to-tsv
The below error shows up:
Traceback (most recent call last):
File "/home/zhaox0b/.conda/envs/qiime2-2022.2/bin/biom", line 11, in
sys.exit(cli())
File "/home/zhaox0b/.conda/envs/qiime2-2022.2/lib/python3.8/site-packages/click/core.py", line 829, in call
return self.main(*args, **kwargs)
File "/home/zhaox0b/.conda/envs/qiime2-2022.2/lib/python3.8/site-packages/click/core.py", line 782, in main
rv = self.invoke(ctx)
File "/home/zhaox0b/.conda/envs/qiime2-2022.2/lib/python3.8/site-packages/click/core.py", line 1259, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "/home/zhaox0b/.conda/envs/qiime2-2022.2/lib/python3.8/site-packages/click/core.py", line 1066, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/home/zhaox0b/.conda/envs/qiime2-2022.2/lib/python3.8/site-packages/click/core.py", line 610, in invoke
return callback(*args, **kwargs)
File "/home/zhaox0b/.conda/envs/qiime2-2022.2/lib/python3.8/site-packages/biom/cli/table_converter.py", line 114, in convert
table = load_table(input_fp)
File "/home/zhaox0b/.conda/envs/qiime2-2022.2/lib/python3.8/site-packages/biom/parse.py", line 672, in load_table
table = parse_biom_table(fp)
File "/home/zhaox0b/.conda/envs/qiime2-2022.2/lib/python3.8/site-packages/biom/parse.py", line 406, in parse_biom_table
c = file_obj.read(1)
File "/home/zhaox0b/.conda/envs/qiime2-2022.2/lib/python3.8/codecs.py", line 322, in decode
(result, consumed) = self._buffer_decode(data, self.errors, final)
UnicodeDecodeError: 'utf-8' codec can't decode byte 0xb8 in position 12: invalid start byte
Could you please advise where went wrong?
Thanks a lot