I have completed taxonomy analysis using Qiime2. After generating the taxa bar plots in Qiime2 view, there was an option for downloading CSV file. The downloaded CSV file from that site contains bacterial taxonomy levels (eg. level 6) that I selected previously and a lot of values. Can anyone tell me what these values indicate? Are these numbers of bacteria or taxonomy hits?
Hello!
If I understood your question correctly, values in the csv table represent the number of features (ASVs or OTUs), that were assigned to certain taxonomy level by samples.
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