Clustering and taxonomy output

[Nicholas_Bokulich]

@Isis_Guibert

If my CSV file reports the number of sequences assigned to each taxon, how do I do to get a CSV file with the unique COI ASVs for each taxon?

If you want the number of unique ASVs assigned to each taxon, there is not a straightforward way to accomplish this in QIIME 2, though it would be relatively simple to whip up a solution in R or python, see here for some related discussion:

Number of Features per Taxon

Hello everyone, I was wondering if there is a way to use qiime taxa collapse and output the number of features within each taxon. For example, collapse my data by phylum and show how many features fall into each phylum per sample. Currently I believe the value given is read counts. Cheers, Danny