# cant save heatmap in SVG format from mmvec plugin

**URL:** https://forum.qiime2.org/t/cant-save-heatmap-in-svg-format-from-mmvec-plugin/16434
**Category:** Library Support
**Tags:** plugin-development
**Created:** [September 8, 2020, 3:07pm UTC](https://forum.qiime2.org/t/cant-save-heatmap-in-svg-format-from-mmvec-plugin/16434 "2020-09-08T15:07:09Z")
**Posts on this page:** 8
**Page:** 1

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### Author: ![khemlalnirmalkar](https://forum.qiime2.org/user_avatar/forum.qiime2.org/khemlalnirmalkar/32/11213_2.png) [@khemlalnirmalkar](https://forum.qiime2.org/u/khemlalnirmalkar)
#### Post date: [September 8, 2020, 3:07pm UTC](https://forum.qiime2.org/t/cant-save-heatmap-in-svg-format-from-mmvec-plugin/16434/1 "2020-09-08T15:07:09Z")

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Hello,  
I am using mmvec qiime2 plugin and i have an issue,  
If you see my heatmap, log scale and metabolite names are interfering with each other. Since qiime2 view is giving me only PDF format to save, i can't edit it. Is there any way to save it in an SVG format? i couldn't find the option.  
I looked for similar questions in the forum but didn't work for me.  
Thanks,

 ![heatmap2](https://forum-qiime2-org.s3.dualstack.us-west-2.amazonaws.com/original/2X/5/58e8331d588418cd7f87da892e3bb1ead181cf7d.jpeg)

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### Author: ![timanix](https://forum.qiime2.org/user_avatar/forum.qiime2.org/timanix/32/17879_2.png) [@timanix](https://forum.qiime2.org/u/timanix)
#### Post date: [September 8, 2020, 3:25pm UTC](https://forum.qiime2.org/t/cant-save-heatmap-in-svg-format-from-mmvec-plugin/16434/2 "2020-09-08T15:25:34Z")

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Hi, could you share a .qzv file? That's strange

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### Author: ![khemlalnirmalkar](https://forum.qiime2.org/user_avatar/forum.qiime2.org/khemlalnirmalkar/32/11213_2.png) [@khemlalnirmalkar](https://forum.qiime2.org/u/khemlalnirmalkar)
#### Post date: [September 8, 2020, 3:58pm UTC](https://forum.qiime2.org/t/cant-save-heatmap-in-svg-format-from-mmvec-plugin/16434/3 "2020-09-08T15:58:51Z")

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Hi,  
Please find the attached qzv file,

[NT\_ranks-heatmap\_label.qzv](https://forum.qiime2.org/uploads/short-url/9Tmxo56yrX8mqffT47g8WpR7OVB.qzv) (568.7 KB)

Thanks for quick response,  
Khem

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### Author: ![timanix](https://forum.qiime2.org/user_avatar/forum.qiime2.org/timanix/32/17879_2.png) [@timanix](https://forum.qiime2.org/u/timanix)
#### Post date: [September 9, 2020, 6:29am UTC](https://forum.qiime2.org/t/cant-save-heatmap-in-svg-format-from-mmvec-plugin/16434/4 "2020-09-09T06:29:50Z")

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Hi, looks like the problem with heatmap visualization.  
I think that you can solve it or by reducing the dataset, or by redrawing it outside Qiime2

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### Author: ![thermokarst](https://forum.qiime2.org/letter_avatar_proxy/v4/letter/t/8e7dd6/32.png) [@thermokarst](https://forum.qiime2.org/u/thermokarst)
#### Post date: [September 9, 2020, 3:12pm UTC](https://forum.qiime2.org/t/cant-save-heatmap-in-svg-format-from-mmvec-plugin/16434/5 "2020-09-09T15:12:17Z")

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@mortonjt - can you comment on this when you get time? Thanks!

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### Author: ![mortonjt](https://forum.qiime2.org/user_avatar/forum.qiime2.org/mortonjt/32/3488_2.png) [@mortonjt](https://forum.qiime2.org/u/mortonjt)
#### Post date: [September 9, 2020, 3:23pm UTC](https://forum.qiime2.org/t/cant-save-heatmap-in-svg-format-from-mmvec-plugin/16434/6 "2020-09-09T15:23:46Z")

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You should be able to open up the pdf file in software like inkscape -- that would allow you to save to svg.

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### Author: ![khemlalnirmalkar](https://forum.qiime2.org/user_avatar/forum.qiime2.org/khemlalnirmalkar/32/11213_2.png) [@khemlalnirmalkar](https://forum.qiime2.org/u/khemlalnirmalkar)
#### Post date: [September 10, 2020, 2:47am UTC](https://forum.qiime2.org/t/cant-save-heatmap-in-svg-format-from-mmvec-plugin/16434/7 "2020-09-10T02:47:29Z")

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Inkscape worked,

Thanks Jamie @mortonjt ,

Khem

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### Author: ![system](https://forum-qiime2-org.s3.dualstack.us-west-2.amazonaws.com/original/3X/2/1/21af5fe23cb6f4579467c66a9ed94e55274ca7bd.svg) [@system](https://forum.qiime2.org/u/system)
#### Post date: [October 11, 2020, 8:47am UTC](https://forum.qiime2.org/t/cant-save-heatmap-in-svg-format-from-mmvec-plugin/16434/8 "2020-10-11T08:47:29Z")

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