tengfey
(Fei TENG)
August 23, 2018, 12:10am
1
Hi,
Can I replace greengenes database with other databases, like HOMD or ORALCore database for the taxonomic analysis? If yes, which file should I use for the classification and how can I convert *.fna into *.qza?
qiime tools import
–input-path sequences.fna
–output-path sequences.qza
–type ‘FeatureData[Sequence]’ ?
Thanks!
1 Like
Hello,
Yes, you can use other databases! There is both an overview of how the taxonomic classifiers work and also a tutorial on training taxonomic classifiers , which covers how to build the *.qza file you need.
Let me know if this helps. Getting databases into the right format can be hard, so please post any question you have along the way.
Colin
2 Likes
tengfey
(Fei TENG)
August 28, 2018, 6:07pm
3
Thanks so much! The databases worked well!
system
(system)
Closed
September 29, 2018, 12:07am
4
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