There is a way to change the legends from the bar plot?
for something like this:
Honestly, probably some time in illustrator, which is how I usually edit pdf or pngs that are generated from these outputs. Ben
You can try to generate your own bar plots using .csv files inside .qzv, I have done it easily with plotly. With some regex you can get rid of these. But I think they are useful since I’m not good at spotting if let’s say Betaproteobacteria is a name of order or phylum. I did my plots to change “__” into “Unknown” and to get rid of parantheses.
I’m also in the “make your own” camp. I tend to make my own bar plots in seaborn because I get so much more control over the final image.