# Automating qiime2 commands with bash script

**URL:** https://forum.qiime2.org/t/automating-qiime2-commands-with-bash-script/22153
**Category:** General Discussion
**Created:** [February 11, 2022, 8:19pm UTC](https://forum.qiime2.org/t/automating-qiime2-commands-with-bash-script/22153 "2022-02-11T20:19:36Z")
**Posts on this page:** 1
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### Author: ![DaS](https://forum.qiime2.org/letter_avatar_proxy/v4/letter/d/46a35a/32.png) [@DaS](https://forum.qiime2.org/u/DaS)
#### Post date: [February 16, 2022, 9:22am UTC](https://forum.qiime2.org/t/automating-qiime2-commands-with-bash-script/22153/6 "2022-02-16T09:22:14Z")

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To add an alternative implementation: I maintain a nextflow pipeline for amplicon sequencing analysis: [ampliseq: Introduction](https://nf-co.re/ampliseq) & [GitHub - nf-core/ampliseq: Amplicon sequencing analysis workflow using DADA2 and QIIME2](https://github.com/nf-core/ampliseq). I made a more detailed post [here](https://forum.qiime2.org/t/nf-core-ampliseq-a-versatile-comprehensive-and-reproducible-amplicon-sequencing-analysis-pipeline/22019).

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