Ancombc graphic visualization?

Hey guys,

I have managed to successfully generate an ancombc and convert it to qzv using qiime composition. But I wanted to know if there is a way to generate a graphic of it, just like qiime2 offers the visualization in graphic to ancom?

Hi @Liviacmg,

Great question! We have two visualizations that can be used for differential abundance outputs from ancombc, but we do not have a volcano plot visualization. We have a summary table visualization, as well as a barplot. You can run these with the following commands:

qiime composition tabulate
qiime composition da-barplot

You can run these commands with the --help flag enabled to examine the specific inputs and parameters required for each visualization. Hope this helps! Cheers :lizard:

1 Like

Hi @lizgehret ,

Thank you so much!


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