ANCOM results interpretation

[Nicholas_Bokulich]

@Parix

I don’t know how to deal with multiple testing in that case.

Yeah I am not sure either how to deal with multiple testing in that case.

Here's another relevant topic, but it looks like we came to the same conclusion. @Mehrbod_Estaki did the ANCOM authors tell you how to handle pairwise tests?

Pairwise testing of ANCOM results

I'm just trying out ANCOM for the first time and had a couple of questions regarding its output. My question extends a bit from a previous thread. Currently the visualization output lists features that are considered significantly different across a grouping variable, and it provides some element of test-statistic and effect size (W scores and the F-scores, respectively). As far as I can tell ANCOM doesn't provide an option for pairwise testing if your experiment has more than 2 groups (which is…