When viewing my alpha-rarefaction.qzv using qiime diversity alpha-rarefaction, it seems more than half of my samples under my Sample Metadata Column “Sample_Name,” don’t show up in the legend (even after setting --p-max-depth to something as low as 52). Looking at my “Frequency per Sample” from my table.qzv, I know they should be there. However, when I move to a different Sample Metadata Column like “Species,” it seems like the missing data is there. Could something be wrong in the my metadata file? I’ve attached my alpha-rarefaction.qzv and metadata file just in case.
alpha-rarefaction-depth0.qzv (823.9 KB)
Taiwan-Mapping-File.txt.txt (26.3 KB)