ls -ald /spin1/scratch/ywan
drwxrwxrwx 14 ywan ywan Aug 31 14:04 /spin1/scratch/ywan
I have duplicated those errors on several independent sets. It happened every time. For two commands it has issue:
"qiime alignment mask --i-alignment aligned-sequences.qza --o-masked-alignment masked-aligned-sequences.qza"
"qiime phylogeny midpoint-root --i-tree unrooted-tree.qza --o-rooted-tree rooted-tree.qza"
Other commands are fine.For this system, I don't have permission with some system files. The error code is the following:
"Exception ignored in: <finalize object at 0x7f866bc217a0; dead>
Traceback (most recent call last):
File "/usr/local/apps/QIIME/2.2017.7/envs/qiime/lib/python3.5/weakref.py", line 548, in call
return info.func(*info.args, **(info.kwargs or {}))
File "/usr/local/apps/QIIME/2.2017.7/envs/qiime/lib/python3.5/site-packages/qiime2/core/path.py", line 94, in _destruct
shutil.rmtree(path)
File "/usr/local/apps/QIIME/2.2017.7/envs/qiime/lib/python3.5/shutil.py", line 480, in rmtree
_rmtree_safe_fd(fd, path, onerror)
File "/usr/local/apps/QIIME/2.2017.7/envs/qiime/lib/python3.5/shutil.py", line 418, in _rmtree_safe_fd
_rmtree_safe_fd(dirfd, fullname, onerror)
File "/usr/local/apps/QIIME/2.2017.7/envs/qiime/lib/python3.5/shutil.py", line 422, in _rmtree_safe_fd
onerror(os.rmdir, fullname, sys.exc_info())
File "/usr/local/apps/QIIME/2.2017.7/envs/qiime/lib/python3.5/shutil.py", line 420, in _rmtree_safe_fd
os.rmdir(name, dir_fd=topfd)
OSError: [Errno 39] Directory not empty: 'data'"