Hi Matthew,
I analysed data suing qiime2 pipeline on macOS platform. Could you share a few papers to write and interpret the obtained results?
Sincerely, Bhagwan
Hi Matthew,
I analysed data suing qiime2 pipeline on macOS platform. Could you share a few papers to write and interpret the obtained results?
Sincerely, Bhagwan
Hi @Bhagwan,
Are you looking for advice to write a methods section (in which case there’s a nice description in the official docs?
Otherwise, interepretation of your results is a big complex topic. I’ll be honest and say its taken me about 5 years to get a handle on how to remotely approach interpretation and I’m nowhere near where I should/could be. (Although perhaps results interpreation is one of those exercises like , , , etc where there is always room to be better.) This depends on your question, on what your data has/hasn’t shown, on the metrics you used, etc. (I’d also argue this is why you hire a , but that’s another discussion).
I did do a quick search of google scholar gives a mix of methods and benchmarking papers, but starting from page 2, there are several that use QIIME 2; I’ll also link you to a recent pre-print of mine that I’m proud of that used a mix of QIIME 2, R, vanilla python, perseverance, and profanity.
Also, worth keeping in mind that anything you see published now likely took 6-12 months to analyze plus time to make it through review, so there are new features, methods, ideas, etc in this fast moving field!
Best,
Justine