General Discussion


Topic Replies Activity
When to make the phylogenetic tree 2 August 6, 2019
Alpha rarefaction x axis 3 August 1, 2019
Using Qiime2 to run core diversity analysis on Humann2 outputs 2 July 24, 2019
Finding common species between two studies 5 August 25, 2019
alpha and beta diversity interpretation 11 August 24, 2019
Help! Too many taxa in mock community - how to interpret or how to deal with it? 2 July 23, 2019
Wouldn't it be better to think of an ASV as a distinct 16S copy, rather than a distinct species? 5 July 23, 2019
Alpha rarefaction: Interpretation of Results 4 August 23, 2019
trimming sequences prior to dada2 in the moving pictures tutorial 5 July 21, 2019
What does the NA represent in the legend? 5 July 19, 2019
Normalisation of features 6 August 19, 2019
taxa-bar-plot and rarefying 4 July 18, 2019
How to pick a sampling depth for alpha & beta diversity. 2 July 18, 2019
Usefulness of Presence-absence analysis? 9 July 18, 2019
classifier question 4 July 17, 2019
taxa-bar-plot visualization 5 July 16, 2019
ASV IDs in publication 5 July 12, 2019
Comparison of Similarity Between Two Different Datasets 2 July 11, 2019
Unusual taxa in analysis 3 August 11, 2019
A few general question about qiime2 12 July 10, 2019
Comparing samples 7 August 9, 2019
Filter-out Chloroplast and mitochondria 4 July 9, 2019
alpha rarefaction -sampling depth 3 July 5, 2019
quality score and where to truncate sequence in DADA2? 3 July 3, 2019
Import Greengenes database 2 August 3, 2019
dada2 parameter to remove primer sequences and low quality bases 3 August 3, 2019
normalization in QIIME2 2 June 28, 2019
Simpson's index in qiime2 3 June 28, 2019
Normalization for microbiome 16s sequence analysis 10 June 27, 2019
benchmarking single/paired/join prior to denoising 4 June 26, 2019