General Discussion


Topic Replies Created
QIIME compatible taxonomic databases help 6 March 13, 2019
Do the EMP 18S rRNA primers amplify bacteria as well? 4 February 20, 2019
SILVA: why is chloroplast defined as bacteria? 7 December 4, 2018
Using trimmomatic before qiime2 2 March 8, 2019
QIIME 1 and 2 returning completely different outputs 5 March 6, 2019
Parameters Description 2 March 8, 2019
Parameters are done In Order? 4 March 5, 2019
DADA2 parameters, Data Quality is so poor 3 March 5, 2019
Merging paired-end reads 2 March 4, 2019
After using DADA2, needs to take OTUs? 6 March 3, 2019
QIIME2 resource for developer 2 March 4, 2019
Low quality forward reads 8 February 28, 2019
What you Trimmomatic or quality control methods of qiime2? 3 March 1, 2019
Number of samples and Frequency per samples Vs. Number of Features and Frequencies per Features 9 February 26, 2019
Handling ambiguous nucleotides in database construction 7 February 26, 2019
No understand the these parameters' concept 8 February 25, 2019
Taxonomy assignment and rarefying 3 February 25, 2019
How can i pull individual bacterial sequences from 16s processed data 9 February 15, 2019
Filtering samples from sequencing run before running DADA2 5 February 15, 2019
Distance Matrix and features 2 February 14, 2019
Identifying bacterial taxa (16S) that correlate with eukaryotic taxa (18S) 8 February 6, 2019
Taxonomic drivers 5 December 15, 2018
Filter representative FASTA sequences 4 February 12, 2019
Using read counts for abundance analysis 8 February 8, 2019
Why does Greengenes assign more features at the class and order ranks than Silva? 1 February 8, 2019
Minimum read for denoising process 5 February 6, 2019
Working on functional gene- providing a database 2 February 7, 2019
I'm loosing too many OTUs with taxa filter-table (~80%)--is this a normal/common phenomenon? 9 January 30, 2019
Viewing reads before denoising 2 February 1, 2019
Question about analyzing many samples 3 January 30, 2019