General Discussion


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Best of the QIIME 2 Forum

I have been meaning for a while now to put together a list of frequently asked questions on the forum. Some questions — such as memory errors — crop up frequently on the forum, and my hope is that this can serve as a poi…

5 February 27, 2020
About the General Discussion category 1 November 14, 2018
Sequence length statistics 14 March 30, 2020
Importing metadata from Integrative Human Microbiome Project (iHMP) publicly available data 10 March 27, 2020
Understanding taxonomic assignment 3 March 24, 2020
How many threads to use for SEPP? 2 March 24, 2020
Why not significant, even though their compositions were different between before and after treatment? 1 March 22, 2020
How to deal with the trailing number in taxa table? 3 March 22, 2020
Short sequence or longer sequence with ambiguous base of 16S v3-v4 sequencing 6 March 21, 2020
metagenmomics in qiime2 5 March 19, 2020
Custom OTU Clustering , specifity 8 March 17, 2020
Understanding PERMANOVA QIIME2 Statistics for Beta Diversity 5 March 16, 2020
Merge counts of different regions for same samples 4 March 16, 2020
Association of microbial abundance with continuous metadata 4 March 12, 2020
dmeultiplexing fastq files that contain multiple samples 3 March 12, 2020
Which denoising algorithm is better or preferred? 2 March 11, 2020
qiime2 OTU picking with hundreds of samples 37 March 12, 2020
Data quality problem 2 March 9, 2020
Why does Greengenes assign more features at the class and order ranks than Silva? 9 March 6, 2020
16S primer pair 5 March 6, 2020
PIME (2019) prevelance-filtering method discussion 2 March 5, 2020
Adjusted PCoA plot - is this possible? 3 March 5, 2020
Which method can relate kegg pathway to taxonomy from metagenomics? 1 March 3, 2020
Bencmarking datasets 3 March 4, 2020
Large dataset of 400 soil samples 3 March 3, 2020
SILVA taxonomy - strange genus names 3 February 28, 2020
The same three genus belongs to different family 10 February 28, 2020
Read length selection during extraction from reference databases 12 February 24, 2020
some confusion about the feature table of qiime2 5 February 24, 2020
The solution about the MemoryError when training classifier with SILVA 132 3 February 24, 2020