Community Contributions


Plugins The Community Plugins category is for sharing QIIME 2 plugins that are not part of the QIIME 2 Core Distribution. These may be contributed by members of the QIIME 2 plugin developer community, or by QIIME 2 developers who are not ready to transition their methods into the core distribution yet (e.g., because the methods and visualizers are experimental, or because the plugin or some of its dependencies are not conda installable). Translations This category contains translations of the QIIME 2 documentation in different languages, developed and contributed by members of the QIIME 2 user community. The translated documentation should be considered supplemental to the primary documentation at https://docs.qiime2.org. If the translated documentation is popular, we may eventually work towards including it at https://docs.qiime2.org. Data resources The Community Data Resources category is for sharing QIIME 2 resources, such as trained feature classifiers or reference databases, that are not listed on the QIIME 2 Data Resources page. These may be contributed by members of the QIIME 2 developer or user community, or by QIIME 2 developers who are not ready to include their resource on the QIIME 2 Data Resources page yet. Tutorials The Community Tutorials category is for sharing QIIME 2 tutorials that are not part of the official QIIME 2 documentation. These may be contributed by members of the QIIME 2 user community, or by plugin developers who are drafting new tutorials that may ultimately be included in the QIIME 2 documentation.
Topic Replies Activity
About the Community Contributions category 1 February 14, 2018
Demultiplexing and Trimming Adapters from Reads with q2-cutadapt 11 February 19, 2020
SILVA 138 Classifiers 12 February 19, 2020
Available: Pre-trained classifier of V3-V4 (341F, 805R) region with gg_99 9 February 18, 2020
Generate Krona charts from Taxa Barplots 18 February 14, 2020
Exporting and modifying BIOM tables (e.g. adding taxonomy annotations) 16 February 13, 2020
Tutorial: Integrating QIIME2 and R for data visualization and analysis using qiime2R 7 February 13, 2020
Alpha and Beta Diversity Explanations and Commands 13 February 11, 2020
Fungal ITS analysis tutorial 12 January 24, 2020
q2-micom: metagenome-scale metabolic modeling in Qiime (+tutorial) 1 January 22, 2020
Qiime2 on Windows Subsystem for Linux 5 January 28, 2020
ANCOM: 'low W taxa identified as significant' issue's workaround, ANCOM2 code/instructions 8 January 11, 2020
Silva 132 classifiers 17 January 10, 2020
q2-SCNIC: A tool for making correlation networks, finding modules of observations and summarizing them 21 January 3, 2020
QIIME2 snakemake workflow tutorial - 18S/16S tag-sequencing 5 January 2, 2020
Q2-metabolomics plugin to import metabolomics data for analysis in qiime2 2 December 20, 2019
SILVA 132 Classifiers 341f-806r region 8 December 17, 2019
Greengenes 341-805 classifier 3 December 13, 2019
Running sanity checks on custom QIIME 2 classifiers 6 January 13, 2020
CSS normalization of sequence counts with metagenomeSeq in R 4 December 12, 2019
Q2-corncob: Community Tutorial 8 December 10, 2019
q2-gcn-norm: plugin for normalizing sequences by 16S rRNA gene copy number 7 December 8, 2019
Normalize ASV by 16S copy number 4 November 27, 2019
Creating a BugBase/PICRUSt compatible OTU table within QIIME2 3 November 21, 2019
Q2-phylogeny: Community Tutorial 1 June 5, 2018
QIIME 2用户文档. 22Python命令行模式(2019.7) 1 October 31, 2019
QIIME 2用户文档. 21图形界面q2studio(2019.7) 1 October 31, 2019
QIIME 2用户文档. 20命令行界面q2cli(2019.7) 1 October 31, 2019
QIIME 2用户文档. 19使用q2-vsearch聚类OTUs(2019.7) 1 October 30, 2019
QIIME 2用户文档. 18序列双端合并read-joining(2019.7) 1 October 30, 2019