Community Contributions


Translations This category contains translations of the QIIME 2 documentation in different languages, developed and contributed by members of the QIIME 2 user community. The translated documentation should be considered supplemental to the primary documentation at <a href="https://docs.qiime2.org">https://docs.qiime2.org</a>. If the translated documentation is popular, we may eventually work towards including it at <a href="https://docs.qiime2.org">https://docs.qiime2.org</a>. Data resources The Community Data Resources category is for sharing QIIME 2 resources, such as trained feature classifiers or reference databases, that are not listed on the <a href="https://docs.qiime2.org/2017.12/data-resources/">QIIME 2 Data Resources page</a>. These may be contributed by members of the QIIME 2 developer or user community, or by QIIME 2 developers who are not ready to include their resource on the <a href="https://docs.qiime2.org/2017.12/data-resources/">QIIME 2 Data Resources page</a> yet. Tutorials The Community Tutorials category is for sharing QIIME 2 tutorials that are not part of the official <a href="https://docs.qiime2.org/2017.7/tutorials/">QIIME 2 documentation</a>. These may be contributed by members of the QIIME 2 user community, or by plugin developers who are drafting new tutorials that may ultimately be included in the QIIME 2 documentation. Plugins The Community Plugins category is for sharing QIIME 2 plugins that are not part of the <a href="https://forum.qiime2.org/t/how-the-forum-works/7085#heading--glossary-core-distribution">QIIME 2 Core Distribution</a>. These may be contributed by members of the QIIME 2 plugin developer community, or by QIIME 2 developers who are not ready to transition their methods into the core distribution yet (e.g., because the methods and visualizers are experimental, or because the plugin or some of its dependencies are not conda installable).
About the Community Contributions category [Community Contributions] (1)
Fungal ITS analysis tutorial [Tutorials] (1)
q2-SCNIC: A tool for making correlation networks, finding modules of observations and summarizing them [Plugins] (17)
Case-Control Studies and Batch Correction: Community Tutorial [Tutorials] (1)
Q2-ghost-tree Plugin: Community Tutorial for Creating Hybrid-Gene Phylogenetic Trees [Tutorials] (2)
Available: Pre-trained classifier of V3-V4 (341F, 805R) region with gg_99 [Community Contributions] (5)
Qiime2 compatible oceanic databases - PR2 and Phytoref [Data resources] (1)
Q2-phylogeny: Community Tutorial [Tutorials] (1)
Q2-perc-norm community plugin [Plugins] (3)
Creating a BugBase/PICRUSt compatible OTU table within QIIME2 [Community Contributions] (2)
Installing Community Plugins in Docker [Tutorials] (4)
Running The Moving Pictures Tutorial In Docker (2018.11) [Tutorials] (1)
QIIME 2 installation failure - widgetsnbextension [Tutorials] (2)
Tutorial: Integrating QIIME2 and R for data visualization and analysis using qiime2R [Tutorials] (1)
Using q2-clawback to assemble taxonomic weights [Tutorials] (2)
Theoretical motivation for 16S data processing [Tutorials] (3)
New QIIME 2 overview tutorial for experienced/intermediate users [Tutorials] (1)
SILVA 128 classifiers available for download [Data resources] (2)
Tutorial: Basic Command Line Interface for Beginners to Qiime2 [Community Contributions] (1)
Q2-ITSxpress: A tutorial on a QIIME 2 plugin to trim ITS sequences ( 2 ) [Plugins] (27)
Q2-picrust2: Updated pipeline for metagenome inference with denoised sequences [Plugins] (3)
Exporting and modifying BIOM tables (e.g. adding taxonomy annotations) [Tutorials] (6)
Automatic Manifest Maker in R [Tutorials] (5)
CSS normalization of sequence counts with metagenomeSeq in R [Tutorials] (3)
Q2-metabolomics plugin to import metabolomics data for analysis in qiime2 [Plugins] (1)
Q2-sourmash : a plugin for generating and comparing MinHash sketches [Plugins] (1)
Q2-corncob: Community Tutorial [Tutorials] (1)
Q2-Brocc: Community Tutorial [Tutorials] (1)
Q2-Karenina: Community Tutorial [Plugins] (1)
Q2-alignment: reference based alignment using SINA [Tutorials] (1)